Gene detail information of Glyur000054s00005344 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G20260.1 | 2.00E-26 | photosystem I subunit E-2 |
| NR | XP_003625462.1 | 1.32E-56 | Photosystem I reaction center subunit IV A [Medicago truncatula] |
| Swissprot | tr|Q41228|PSAEA_NICSY | 1.00E-41 | Photosystem I reaction center subunit IV A isoform 2 (Precursor) |
| trEMBL | tr|G7KZJ5|G7KZJ5_MEDTR | 5.00E-57 | Uncharacterized protein {ECO:0000313|EMBL:AFK39271.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00054 | 352335 | 353757 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000054s00005344.1 | PF02427.12 | PSI_PsaE | 63 | 120 | 2.30E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.598 |
| SRR1783600 | control | 0.563 |
| SRR1783602 | moderate drought stress | 0.405 |
| SRR1811619 | moderate drought stress | 0.328 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.213 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.033 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.407 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.556 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1086.880 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1068.716 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.855 |
| SRR2868004 | Drought Stress (root) | 20.011 |
| SRR2967015 | Control (root) | 4.681 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 494.579 |
| SRR9715740 | Leaf | 687.613 |
| SRR9715741 | Leaf | 437.267 |
| SRR9715739 | Root | 0.414 |
| SRR9715742 | Root | 0.418 |
| SRR9715743 | Root | 0.567 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.318 |
| SRR8749028 | MeJA induced 9h | 2.732 |
| SRR8749029 | MeJA induced 9h | 2.033 |
| SRR8749030 | Uninduced | 1.882 |
| SRR8749031 | Uninduced | 0.126 |
| SRR8749032 | Uninduced | 3.728 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.849 |
| SRR8400027 | Control - Root | 7.453 |