Gene detail

Gene detail information of Glyur000054s00005340

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G43900.1	myosin 2
NR	XP_006576975.1	PREDICTED: myosin-6-like isoform X2 [Glycine max]
Swissprot	tr\|Q9LKB9\|MYO6_ARATH	Myosin-6
trEMBL	tr\|K7KFL5\|K7KFL5_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G32660.2}

Sequence

Transcript Sequence

>Glyur000054s00005340.1
GCTGCTGCCACCAATCCTATAGTTGGGTCCCATGTTTGGGTGGAGGATTCTGATGTAGCTTGGATGGATGGCGAGGTCTTGGAGGTTAACAGAGAAGATATCAAAGTCCTTTGCACTTCAGGGAAGACGGTTGTTGTTAAAGCTNCCAGTATTTATCATAAAGATACCGAAGTTCCACCAAGTGGAGTGGATGATATGACAAAGCTTGCGTACCTGCACGAACCTGGAGTCCTATATAATCTGAAATCAAGATATGATATCAATGAAATTTATACTTACACTGGGAATATATTGATTGCTGTTAACCCTTTCATAAAGCTTCCTCATTTATATGATAGCCATATGATGGCGCAATATAAAGGAGCAGCTTTTGGTGAGTTAAGTCCACATCCCTTTGCCGTTGCAGATGCAGCGTACAGGCTTATGATAAATGAGGGAATCAGCCAGTCAATATTGGTTAGTGGTGAAAGTGGGGCCGGTAAAACAGAAAGTACCAAGTTACTCATGCGATATCTTGCTTACATGGGGGGGAGAGCTGTTGCTGAAGGTAGAACTGTTGAGCAAAAAGTCCTGGAGTCCAATCCTGTCCTGGAAGCCTTTGGGAATGCAAAGACTGTAAGGAACAATAATTCAAGTCGTTTTGGTAAGTTTGTGGAGATTCAATTCGATCAAAAGGGAAGAATTTCAGGCGCTGCTATCAGAACTTATCTGCTGGAAAGATCACGTGTTTGCCAGGTGTCAGATCCAGAGAGGAATTATCATTGTTTCTACATGCTCTGTGCTGCACCTCCAGAGGATCTTAAGAAGTACAAATTAGGACATCCTAGAACATTTCATTATCTGAATCAGTCAAATTGCTACGAGTTGGAAGGGATTGATGAATCTAGAGAATATAGTGCTACAAGGAGAGCAATGGATGTTGTTGGAATAAGTTCTGAGGAGCAGGATGCAATATTTAAAGTTGTTGCCGCAATTTTACATCTTGGGAACATTGAATTTGTGAAAGGGAAGGAGATAGATTCATCTGTGCCCAAAGATGAAAAGTCCCGGTTCCATCTACAGACTGCAGCTGAGCTTTTTATGTGTGATGCAAAGGCACTTGAAGATTCTCTTTGTAAACGTGTAATTGTTACTCGAGATGAAACAATTATAAAATGCTTGGATCCAGAAGCTGCTACACTTAGCCGAGATGCTTTGGCTAAGATTGTATACACAAGGTTGGTTGATAAAATAAATAATTCCATTGGTCAAGATCCTGAGTCAAAATCCTTGATTGGTGTGCTGGATATTTATGGTTTTGAGAGTTTCAAGACTAACAGTTTTGAGCAATTTTGTATCAACTTGACCAATGAAAAGCTTCAGCAACATTTTAATCAGCATGTTTTCAAAATGGAGCAAGAAGAATACAAAAAAGAAGAAATTGATTGGAGTTACATTGAATTTGTGGACAATCAAGATATTCTGGATCTGATTGAAAAGAAACCTGGTGGCATTATTGCTCTTTTGGACGAAGCTTGTATGTTTCCTAGATCAACACATGAAACTTTTGCCCAAAAGCTGNATCAGACCTTCAAAAACCATAAAAGGTTTAGCAAGCCCAAATTATCACGCAGTGACTTCACAATTTGCCATTATGCTGGTGATGTCACTTATCAAACTGAATTGTTCCTCGACAAGAATAAAGATTATGTCGTTGCAGAACACCAAGCACTTCTTTATGCTTCCAAATGTCCCTTCGTGTCAGGCTTGTTCCCCCCTTCNCCTGAGGAAACTTCTAAACAATCAAAGTTCTCTTCAATAGGTTCTAGATTTAAGCAACAATTGCAATCTTTACTTGAAACTCTAAGTTCCACTGAGCCACACTACATTCGATGTGTGAAGCCCAATAATCTTCTTAAGCCAGCAATTTTTGAGAATAAAAATGTTTTGCTGCAACTGCGTTGTGGGGGAGTTATGGAGGCAATTAGGATTAGCTGTGCTGGGTATCCCACTAGAAAAACCTTTGATGAATTTGTGGATCGATTTAGCCTTCTTGCACCTGAAGCCTTGGATGGAAGTTCTGATGAGGTCACTGTTTGCAAGAGGATCCTAAAGAATGTTGGACTTGAAGGTTATCAGATTGGTAAAACAAAGGTGTTTCTTCGAGCTGGTCAAATGGCAGAACTTGATACCCGTAGAAGTGAGATCTTAGGAAAGTCAGCAAGCATTATTCAGAGGAAAGTTCGTTCCTATTTGGCCCGTCAAAGTTTCATTTCGCTTCGTTTGTCAGCTGTGCAGATTCAAGCTGCATGCAGAGGACAACTTGCTAGGCAAGTTTACGGGGGAATGCGGCAGGAGGCTTCTAGTCTGCTAATTCAAAGGTGTTTCCGCATGCATATTGCTAGGAAGGCATACAAAGAATTGTATACCTCTGCTGTCTCTATCCAGACTGGTATGAGGGTGATGGCTGCTCGTTGTGAGTTACACTTTAGAAGGCGGACTAGTGCAGCAATTGTCATTCAGAGCCACTGCAGGAAATACTTAGCACAACTCCATTTCATGAAATTAAAGAAGGCGGCAATTACAACACAATGTGCATGGAGAGGAAAAGTTGCTCGACGAGAACTGCGGAAACTTAAGATGGCTGCAAGAGAAACAGGGGCTCTCCAAGCTGCCAAAAATAAGCTTGAAAAGCAAGTTGAAGACCTTCAATTAAGGTTGCAGCTGGAAAAACGTTTAAGGGTGGACATGGAAGAAGCAAAAGCAAAAGAAAATGAAAGATTACAGTCAGCTTTGCAAGAGGTGCAACTTCAGTTTAAAGAAACTAAAGTACTTCTTGAAAAGGAGCGGGAGGCTACAAAAAGAATGGTGGAGAAAGTCCCTGTCATACAGGAGGTTCCAGTTGTTGATCATGCTTTGATGGAGAAGCTCAGTAGTGAAAATAAGAAACTCAAGAACTTGGTGAGTTCACTGGAAAAGAAAATTGATGAAACAGAAAAAAGGTATGAAGAGGCAAACAAAATTAGCGAAGAAAGGTTGAAGCAAGCTTTGGATGCAGAATCAAAAATAATCCAGTTGAAGACTGCTATGCAAAGGCTTGAAGAGAAATTCACAGACATGGAATCTGCAAACCATATTCTTCAGAAACAATCTCTGTTAAACTCATCTGTGAAAACAATAGCAGAACACCTCTCTACCCCTGTAGCCGAGAAGTTGGAAAATGGTCACCATGTGGCAGAAGAACAGAAAGCTGTTGATACATTTGTTACACCTGTGAAACAATTTGGTACAGAATCTGACTCTAAATTGAGGAGATCTTACATTGAACGACATCATGAGAGTGTNGATTCACTTGTCAACTGTGTCACGAAAAATATTGGTTTCAATCATGGAAAGCCTATTGCTGCATTTACCATTTACAAATGTCTTCTCCACTGGAAATCATTTGAAGCTGAAAGAACTAGTGTATTTGATCGCCTTATCCAGGTGGTTGGTTCTGCAATTGAGGATCAAGATGGCAATGATCTTATGGCCTATTGGCTTTCAAATACGTCTGCATTATTGTTTTTACTTGAAGAGAGCCTGAAATCTGCGAGTTTAACAAATGCAACCCCAGTTAGAAAACCACCTAATCCAACATCTCTCTTTGGAAGAATGACTATGGGTTTTCTTACGTCCCCTTCTTCTGCGAACCTTGCTGCCCCTCCACCAGAGGTTGTACGCAAGGTAGAGGCTAAATACCCGGCTTTGCTTTTCAAGCAGCAGCTCACAGCCTATTTGGAGAAAATATATGGCATCATTCGAGATAACTTGAAGAAGGAGTTAACACCGGTTCTTGCATTATGTATCCAGGCACCAAGAACATCAAAGGGAGTGTTACGATCTGGCCGTTCTTTTGGTAAAGATTCCCCAATGGTTCACTGGCAGAGTATTATTGAATCCCTNAACACCCTCCTCTGCACACTGAAAGAGAACTTTGTGCCTCCAGTTCTTATCCAAAAGATCTTCAGTCAAACATTCTCATATATTAATGTGCAACTCTTCAATAGTCTTCTTCTTCGTCGTGATTGTTGCACATTCAGCAATGGGGAATATGTGAAAGCTGGATTAGCTGAATTAGAACTGTGGTGCTGCCAAGCAAAGGAGGAGTATGCAGGATCGTCTTGGGATGAACTTAAGCACATAAGACAGGCTGTTGGATTCTTGGTGATTCATCAGAAGTATAGGATTTCCTATGATGAAATCATCAATGATTTATGCCCTATCCTGAGTGTCCAGCAACTGTATAGAATATGTACACTTTACTGGGATGACAACTACAATACTCGAAGTGTATCACCATATGTGCTTTCAAGCATGAGGATGCTTATGGCTGAGGACTCCAATGATGCTCAGAGTGATTCTTTCTTGTTAGATGACAGCTCCAGCATCCCCTTCTCAGTGGATGACCTCTCTACATCACTGCAAGAGAAGGACTTCTCAGACATGAAACCGGCGGATGAGCTTCTTGAGAATCCGGCCTTCCAATTTTTGAATGAATAGAGGTGCATGAGGAGCTTAGCATGCTTTTGTGATTATTTCATGTCAAGGCTAACAGTAAAATGAGTTGTTGGTCCTTGCCATTANTGCTTGGCTGTAAATGCCATTTTAGATTTATTCTCTCTACATCTTTTTTTTTATCCTTTTAGAAAGAAAGAAAAATCTCACTACATCATTATAGCCATATCCCTGCATACTCATTCCCCTGCTGTATAGCTATTTTTTTTCATTCTTTTGTTAGGCATTCAATTGTAAAATTTTCATTGTTAATACGGGAAGATATATTCTTGGGATTAGTGAGCTTGCCTTGTATCTTCCTTTTTTGCCTTTTTCTCCCTCTTCTGGTCAATTAAAGTGCTTTTATTTGTTTGAGGGGAGAGGCAAGCTC

Protein Sequence

>Glyur000054s00005340.1
AAATNPIVGSHVWVEDSDVAWMDGEVLEVNREDIKVLCTSGKTVVVKAXSIYHKDTEVPPSGVDDMTKLAYLHEPGVLYNLKSRYDINEIYTYTGNILIAVNPFIKLPHLYDSHMMAQYKGAAFGELSPHPFAVADAAYRLMINEGISQSILVSGESGAGKTESTKLLMRYLAYMGGRAVAEGRTVEQKVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQKGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEDLKKYKLGHPRTFHYLNQSNCYELEGIDESREYSATRRAMDVVGISSEEQDAIFKVVAAILHLGNIEFVKGKEIDSSVPKDEKSRFHLQTAAELFMCDAKALEDSLCKRVIVTRDETIIKCLDPEAATLSRDALAKIVYTRLVDKINNSIGQDPESKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYKKEEIDWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLXQTFKNHKRFSKPKLSRSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLYASKCPFVSGLFPPSPEETSKQSKFSSIGSRFKQQLQSLLETLSSTEPHYIRCVKPNNLLKPAIFENKNVLLQLRCGGVMEAIRISCAGYPTRKTFDEFVDRFSLLAPEALDGSSDEVTVCKRILKNVGLEGYQIGKTKVFLRAGQMAELDTRRSEILGKSASIIQRKVRSYLARQSFISLRLSAVQIQAACRGQLARQVYGGMRQEASSLLIQRCFRMHIARKAYKELYTSAVSIQTGMRVMAARCELHFRRRTSAAIVIQSHCRKYLAQLHFMKLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEDLQLRLQLEKRLRVDMEEAKAKENERLQSALQEVQLQFKETKVLLEKEREATKRMVEKVPVIQEVPVVDHALMEKLSSENKKLKNLVSSLEKKIDETEKRYEEANKISEERLKQALDAESKIIQLKTAMQRLEEKFTDMESANHILQKQSLLNSSVKTIAEHLSTPVAEKLENGHHVAEEQKAVDTFVTPVKQFGTESDSKLRRSYIERHHESVDSLVNCVTKNIGFNHGKPIAAFTIYKCLLHWKSFEAERTSVFDRLIQVVGSAIEDQDGNDLMAYWLSNTSALLFLLEESLKSASLTNATPVRKPPNPTSLFGRMTMGFLTSPSSANLAAPPPEVVRKVEAKYPALLFKQQLTAYLEKIYGIIRDNLKKELTPVLALCIQAPRTSKGVLRSGRSFGKDSPMVHWQSIIESLNTLLCTLKENFVPPVLIQKIFSQTFSYINVQLFNSLLLRRDCCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEIINDLCPILSVQQLYRICTLYWDDNYNTRSVSPYVLSSMRMLMAEDSNDAQSDSFLLDDSSSIPFSVDDLSTSLQEKDFSDMKPADELLENPAFQFLNE

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00054	295765	307157	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016459 myosin complex

molecular_function

GO:0003774 motor activity

GO:0005515 protein binding

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000054s00005340.1	PF02736.14	Myosin_N	10	47	6.50E-05
Glyur000054s00005340.1	PF00063.16	Myosin_head	63	715	2.10E-234
Glyur000054s00005340.1	PF00612.22	IQ	732	750	0.0057
Glyur000054s00005340.1	PF00612.22	IQ	756	773	0.0024
Glyur000054s00005340.1	PF00612.22	IQ	780	799	0.001
Glyur000054s00005340.1	PF00612.22	IQ	828	846	0.00068
Glyur000054s00005340.1	PF00612.22	IQ	851	870	0.00017
Glyur000054s00005340.1	PF01843.14	DIL	1327	1434	2.90E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.216
SRR1783600	control	8.200
SRR1783602	moderate drought stress	5.321
SRR1811619	moderate drought stress	5.301

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.690
DRR006520	Root Summer glycyrrhizin high producing strain	4.633
DRR006521	Root Winter glycyrrhizin high producing strain	0.204
DRR006522	Root Winter glycyrrhizin high producing strain	0.199
DRR006523	Root Summer glycyrrhizin low producing strain	4.090
DRR006524	Root Summer glycyrrhizin low producing strain	4.164
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.654
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.600

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.662
SRR2868004	Drought Stress (root)	8.727
SRR2967015	Control (root)	9.534

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.108
SRR9715740	Leaf	2.300
SRR9715741	Leaf	2.907
SRR9715739	Root	0.864
SRR9715742	Root	3.609
SRR9715743	Root	3.195

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.943
SRR8749028	MeJA induced 9h	5.533
SRR8749029	MeJA induced 9h	3.891
SRR8749030	Uninduced	0.276
SRR8749031	Uninduced	0.153
SRR8749032	Uninduced	0.363

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.940
SRR8400027	Control - Root	11.885