Gene detail information of Glyur000054s00005338 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G28706.3 | 5.00E-85 | pfkB-like carbohydrate kinase family protein |
| NR | XP_004493847.1 | 1.90E-155 | PREDICTED: uncharacterized sugar kinase YihV-like isoform X1 [Cicer arietinum] |
| COG | YP_005442091.1 | 2.00E-13 | ribokinase [Caldilinea aerophila DSM 14535 = NBRC 104270] |
| trEMBL | tr|G7KZI5|G7KZI5_MEDTR | 3.00E-150 | PfkB family carbohydrate kinase {ECO:0000313|EMBL:AES81669.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00054 | 282439 | 287359 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000054s00005338.1 | PF00294.19 | PfkB | 9 | 115 | 8.70E-07 |
| Glyur000054s00005338.1 | PF00294.19 | PfkB | 171 | 228 | 3.80E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.477 |
| SRR1783600 | control | 7.739 |
| SRR1783602 | moderate drought stress | 11.059 |
| SRR1811619 | moderate drought stress | 10.728 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.684 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.441 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.275 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.247 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.497 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.450 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.014 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.839 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.109 |
| SRR2868004 | Drought Stress (root) | 10.104 |
| SRR2967015 | Control (root) | 10.091 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.171 |
| SRR9715740 | Leaf | 1.819 |
| SRR9715741 | Leaf | 2.795 |
| SRR9715739 | Root | 2.118 |
| SRR9715742 | Root | 3.589 |
| SRR9715743 | Root | 2.376 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.046 |
| SRR8749028 | MeJA induced 9h | 2.351 |
| SRR8749029 | MeJA induced 9h | 1.612 |
| SRR8749030 | Uninduced | 0.746 |
| SRR8749031 | Uninduced | 0.077 |
| SRR8749032 | Uninduced | 0.207 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.410 |
| SRR8400027 | Control - Root | 14.374 |