Gene detail

Gene detail information of Glyur000054s00005336

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G17940.1	4.00E-29	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_004493825.1	3.28E-139	PREDICTED: uncharacterized protein LOC101502107 isoform X1 [Cicer arietinum]
COG	YP_004509659.1	3.00E-11	hypothetical protein PGTDC60_0936 [Porphyromonas gingivalis TDC60]
trEMBL	tr\|V7CWM4\|V7CWM4_PHAVU	6.00E-130	Uncharacterized protein {ECO:0000313\|EMBL:ESW34592.1}

Sequence

Transcript Sequence

>Glyur000054s00005336.1
ATGATGCTACTAAGAAGCTCATCAACACCAGTTCTTGGATCCCTCCTCTCTTCTTCCTTCACNGATAGTCCTAACCACCCCGAAGCCTGCCATGCAATCAAGCATCTACCACCAACAACCAGTTCACACCACAANCTCTCTTTACATCAAACTGGGTCCTTGAATCTCTCCTGCACTTCTTCTCCAATCTCNCCCTCCATTGCTGACCTTAACAAAGGCTTCAGAAGAGTTCAATCTGATGGGAACTTGGAAGACTTGGCCTACTCTTCTTCCAACAACAACAACAACGATGAAGACAGATTATTNAATTATACAACAGACCCTCTTCCTCCCAAGAGGTTCTCAGCGACACAAAGATGCTTGGCACTTGAGACCATCCCATCTTTCAACCTTTCTAGGCACAAAGGCTTGCGGGTAGAAGAGGAAGATGAAGAAAGTGACTTTGAAGATGATTGGGAAGAAAGAGGAGACTTGGAGGAAGAGGAACTGAAGAGTGGCAGTGGTATGAATATGATATTGAGGACTGAAGAAGTGAGGGTGAAGGATGGAGTCTGTAGGATGGGTTTTGGTGACAATATGGAAGGGGTTGGTGGTGGTGGTGGNAANAAAGGTATGTATCTTGCAAAGGGGCTTGGTGTTGATGTGTGTGGCGATGGCATAGGTGGCTGCAGAGGTAATGGTGGTGGTGGAGGCTATGGCTATGGAGGTGGTGATTCCAATTCCATGAATGATGGAGATGGTAATAANAATCACGATGGGGTGGAAGAATACTACAAGAAAATGGTGGAGGAAAATCCAGGGAATCCATTGTTTCTGAGGAATTATGCTCAGTTCTTGTATCAGTACAAACAAGACGGTGAAGGAGCGGAGGAGTATTATTTGCGTGCCATACTAGCGGACCCAAAAGATGGAGAAGTGTTGTCACAGTATGGGAAGCTGGTATGGGAGGTGCATCATGACCAACAACGAGCCTCCACCTACTTTGAACGAGCTGTACAAGCCTCTCCTCAAGACAGCCACGTACATGCAGCATATGCTTGTTTCCTTTGGGACACAGAGGAAGACGAGGATGGTTGCAATGAGCCACAATGTTTACCCAATCATTTCCACCTGGGAGCTATGGCTACCACTACTACAGGTGTTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00054	279772	281223	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000054s00005336.1	PF13414.1	TPR_11	269	336	5.90E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.532
SRR1783600	control	6.497
SRR1783602	moderate drought stress	10.548
SRR1811619	moderate drought stress	8.862

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.902
DRR006520	Root Summer glycyrrhizin high producing strain	16.473
DRR006521	Root Winter glycyrrhizin high producing strain	2.838
DRR006522	Root Winter glycyrrhizin high producing strain	2.421
DRR006523	Root Summer glycyrrhizin low producing strain	44.915
DRR006524	Root Summer glycyrrhizin low producing strain	41.012
DRR006525	Leaf Summer glycyrrhizin high producing strain	54.734
DRR006526	Leaf Summer glycyrrhizin high producing strain	47.968

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.896
SRR2868004	Drought Stress (root)	3.195
SRR2967015	Control (root)	1.937

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.506
SRR9715740	Leaf	14.932
SRR9715741	Leaf	25.782
SRR9715739	Root	0.966
SRR9715742	Root	1.852
SRR9715743	Root	1.869

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.973
SRR8749028	MeJA induced 9h	4.599
SRR8749029	MeJA induced 9h	4.471
SRR8749030	Uninduced	2.896
SRR8749031	Uninduced	2.573
SRR8749032	Uninduced	2.476

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.996
SRR8400027	Control - Root	4.258