Gene detail

Gene detail information of Glyur000054s00005333.3

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G04140.1	0	Transducin family protein / WD-40 repeat family protein
NR	XP_004493844.1	0	PREDICTED: uncharacterized protein LOC101507891 [Cicer arietinum]
COG	YP_007092229.1	8.00E-18	WD-40 repeat-containing protein [Chroococcidiopsis thermalis PCC 7203]
Swissprot	tr\|Q8W1K8\|MUT11_CHLRE	5.00E-14	Protein Mut11
trEMBL	tr\|I1N9X4\|I1N9X4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G35370.2}

Sequence

Transcript Sequence

>Glyur000054s00005333.3
ATCATGTTGAAAGATCTGGTCACTTCACCGATGAACATAGCTGATATATCTCCCATCATATTTTTTTTTTCACAGTTTGCCCCCTTAGATTAGACCACATTCTCTCACGGACCCCAAAACAACACGTTAATTCCTTTACCGTCGTCTCGCTAGGTCTGTCTGTGTCGTGTGCCCCTTCTTTGAAATCAAACACATCACGGAGGCTCTGAAATAAAGCAACAAGAGAGAGAGAGAGGAGGGCGTATCTAAGAATTCGAGTCAATGAATCTCTGCTGCCTGTAAAACTCTCTCTGATTGGATCCTCTGTTGTGCTTCCCGTCGTTAATCTCAATTTTTTCTTCTCGTGAATTTTGTTTGATTCCCCACAAAATGACGGGATTTTCACGGCCTCGTGATCACACCTCATCTTCCTCCTCCAATTCTAGCGCCAGGGGTAGCAATGTCTTTAAGTTGCTAGCACGGAGAGAGATTTCACCCAGAACAAAACACGTAGCAAAATGGCATTGGGGAGAAGCTTCTAAAACAAAATCCAGTTCTTCCACTCGTCCTAAAAATGATGCAGTACGAGATGCAAGGCGTGGCCTCCTGTCATGGGTCGAGGCTGATTCATTACTACATTTGTCAGCTAAGTATTGCCCTTTATTGCCTGCCCCACGGTCTACTATTGCAGCAGCGTTTAGTCCAGATGGAAAAGTTCTTGCTTCAACACATGGTGACCACACAGTAAAGATAATTGATTGTGAAACTGGAAGTTGCTTAAAGGTGTTAGTTGGCCACAGGAGGACACCTTGGGTGGTTAGGTTCCATCCGTTGCACCCACAAATACTTGCTAGTGGGAGCTTGGATCAAAAAGTTCGATTATGGGATGCTAACACATCGGAGTGCATAATATCTCATCACTTCTATCGACCCATTGCATCCATTGCTTTTCATGCCAAAGGGGAAATAATAGCCGTTGCATCAGGCCACAAGCTGTACATATGGCACTACAACAAGAAAGGTGAAGCATCCTCACCAATATTTGTGTTGAAGACAAGGCGCTCTCTACGGGCTGTGCATTTTCACCCACATGCTGCACCATATCTCTTAACTGCTGAGGTCAATGATCTTGACTCTTCAGATTCCTCAATGACAGAGGCAACATCACTTGGTTATTTACAATATCCTCCGCCTGCTGTTTTCGTTACAAATATTCATCCTACAGAACATACTAGTTTGTCCAGTGAACTACCTTATGTGCCATTGCCTTTCTTCTTCACGCCTTCATATACTGTTGATGAATCAAGAGCAGAACTACAACATTCTAATCATGATGTTGGCTCAGGTAGCATGCAAATTGAATCTTCTGCCAGGGTTCAGTTTCAAGCGGACACAAATGCAACAGAACAATATGATAATACAGTGTCTCCGATGGATACAGTCTCTGAGATATCCACTAACTCTCAAACTGGTATAGAACATCCTGNTCATAGTACTTTCTCTAATGGAATGGGAATTGGCATCAGTAACCTCACAATGGATGGCATGGAGACTGATGAAACCAAACCTGCTGAAGGAAGTCAACACGGAAACTCTACTAATGTATACTCTCTTAATGGTATGCTACATGGACTATCTAGACAAACTGCAAATCGTGGGGTCCTTTCAGAGTTTGGCCAATTTAATCAGTTTTTTTCTTCAAGAGATCTAAGTGGATGGGAGTTACCTTTTCTGCAAGGATGGTTAATGGGTCAAAGTCAAGTTGGTATCTCCTCTATGCTACCTCACATGGGTGTTAGTCGTGACATTCTAGCTCAACAGATTGGTTCCTCTGTAATGGCTAATAATCTTTCCACTTCTAACACTGACGTAGCATTGCCATCTTCAGCATTGTCTGGCAGCATCAGCATACCTGGATCTTCTATGAGATCAGGTTTACGGAATCATTTTTCACAATCCCGTACACCCGTATCTGAATCCGGCAATCTTGCTGATGGGTCTGACATCCAAACCATCATGAGTCGAATCCAGTCAGAACTCGCTACATCAGTGGAAGCAGCAGCTGCCGAGTTGCCTTGCACTGTGAAGTTACGAGTATGGTCACATGACATAAAAAATCCCTATGCCCCACTAAATGCCGACAGATGCCGTCTAACCATACCACATGCTGTCCTCTGCAGTGAAATGGGTGCCCATTTTTCACCATGTGGTAGATTTTTAGCTGCCTGTGTTGCATGTATGCTTCCTCATATAGAAGCTGATCCAGGATTACAAACTCCAGTACATCCAGAGCCTGGCATTTCAACGTCACCAACTCGGCATCCGATATCAGCACACCAAGTTATGTATGAGCTGCGGATATATTCACTTGAGGAGGCAACATTTGGAGCAGTGCTTGCTTCTCGGGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAGTTCTCACCTACATCTGAGCACATACTTCTTGCCTATGGTCGACGTCATGGTTCTCTTCTTAAAAGCATTGTCATTGATGGAGAAACAACATTACCTATATATACAGTGTTGGAGGTATATAGAGTGTCGGATATGGAACTTGTTAGGGTGCTTCCCAGTGCCGAAGATGAGGTCAATGTGGCTTGCTTTCATCCTTTTGCTGGGGGAGGGCTGGTTTATGGAACAAAGGAAGGAAAGCTTAGGATCCTCCACTATGACGGTGCTCAAGCAGTGAGTGGCACTGGACCAAGTTACTTTCCTGAGGAGACCATCATTGGAGTCAGTCAGTGAGCAAGGTTTAGACATATGATTGGAGATGGAATTCAATGATCTGCTTCCCAATATCTGCACCCCTCACACGCTGTCTCTGCTGATGATCTATACAAACTTTTAACACCATATCCAGTGTTGAGCACATGCAACCGAGAGCTGGAAGTCACACTCGCTGCATTACCAAATGTATATTATTGTATGTATTGTATTGTATTGTATGTATTATCAATGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00054	251619	261140	-

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000054s00005333.3	PF00400.27	WD40	101	123	0.013
Glyur000054s00005333.3	PF00400.27	WD40	127	166	1.30E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	34.511
SRR1783600	control	35.703
SRR1783602	moderate drought stress	47.357
SRR1811619	moderate drought stress	46.584

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	33.993
DRR006520	Root Summer glycyrrhizin high producing strain	32.877
DRR006521	Root Winter glycyrrhizin high producing strain	63.106
DRR006522	Root Winter glycyrrhizin high producing strain	60.987
DRR006523	Root Summer glycyrrhizin low producing strain	39.600
DRR006524	Root Summer glycyrrhizin low producing strain	40.486
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.327
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.367

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	35.657
SRR2868004	Drought Stress (root)	40.569
SRR2967015	Control (root)	44.322

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.189
SRR9715740	Leaf	19.540
SRR9715741	Leaf	27.242
SRR9715739	Root	17.402
SRR9715742	Root	36.554
SRR9715743	Root	31.291

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	27.702
SRR8749028	MeJA induced 9h	41.558
SRR8749029	MeJA induced 9h	32.010
SRR8749030	Uninduced	46.098
SRR8749031	Uninduced	63.686
SRR8749032	Uninduced	43.857

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	46.560
SRR8400027	Control - Root	41.522