Gene detail information of Glyur000054s00005332 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G04300.1 | 2.00E-35 | RmlC-like cupins superfamily protein |
| NR | XP_003521321.1 | 1.53E-64 | PREDICTED: uncharacterized protein LOC100793722 [Glycine max] |
| COG | YP_113172.1 | 1.00E-24 | hypothetical protein MCA0659 [Methylococcus capsulatus str. Bath] |
| trEMBL | tr|I1JPA0|I1JPA0_SOYBN | 6.00E-65 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G32610.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00054 | 245864 | 246490 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000054s00005332.1 | PF05899.7 | Cupin_3 | 24 | 96 | 8.10E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.516 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.854 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.778 |
| SRR2868004 | Drought Stress (root) | 15.847 |
| SRR2967015 | Control (root) | 10.717 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.159 |
| SRR9715740 | Leaf | 0.970 |
| SRR9715741 | Leaf | 1.269 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.516 |
| SRR9715743 | Root | 0.473 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.924 |
| SRR8749028 | MeJA induced 9h | 0.328 |
| SRR8749029 | MeJA induced 9h | 0.942 |
| SRR8749030 | Uninduced | 2.955 |
| SRR8749031 | Uninduced | 0.888 |
| SRR8749032 | Uninduced | 0.063 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.207 |
| SRR8400027 | Control - Root | 2.484 |