Gene detail

Gene detail information of Glyur000054s00005331

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G61040.1	1.00E-168	plus-3 domain-containing protein
NR	XP_003529309.1	0	PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1 [Glycine max]
trEMBL	tr\|K7L2P2\|K7L2P2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G31365.1}

Sequence

Transcript Sequence

>Glyur000054s00005331.1
ATGCTTCAGTCCGGCTTTTTTCACATGGGTCAGGGTGCATTTGAATTTGAATTTGAGTTTAAGGCTGAAGCAAACAGAATTACTATGGCGGATTTAGAGAATTTGCTCTTGGAGGCTGCGGGGAGAAACAGACATTCTCTCCCACCTTCTAGAAGAGTGCGTGATGGGAATGGCAAATATTCGGATGGCGGGAGTGGGAGTGATTCCAGAGAGGATGATTCCGACGACGAACACGATTATCAAGGCAGGAAACCCTCTGGCTCACAAGTTCCTCTTAAGAAGAGATTCGATTCAACTGGAAGAGATGACGGCAACGATGGCGATGATGATGGCCATTCTGACCACGAGGGCGATAGCAGCGATGAATCTGATATTGGGGAAGATCTTTATAAGGATGACAATGACAGACAGAAACTTTCCGAAATGACTGAACTCCAAAGAGAGATGATATTGTCGGATAGGGCTACCAAGAAGGATGATAAATTTTTGTTGGGGAAGATAGCGTCGAAGCGTGAGAAGGTAAAGAAGGCAACGGTATCCAGAGAAGGGACTCCGCCTCTCCCATTGTCTCGCGTGCGCTCATCCACCAGATCTGCTGACAGGTCGGCTGCCAAGGATGATGCGTTAAATGAATTGCGCGCAAAGCGGTTGAAGCAGCAAGATCCGGAGACGCAGCGCAGGCTAAGAGAGGCATCTAGAAGTGCAGGACCAGGGCATTTTCCACCAAAAGGCAAACCTTACGCTTCAATGGGTCTCAGTGGCTCAAGCCATAGTGAAAGTGAAAGTAGGTCCAACAGCGACGATGAAGATTCGACTGGAGATGGAGGCATTATTGACAGTGATGATGACAGGTTTGAAGGGCCTTCGTTTGAGGACATTAAAGAAATCACCATTCGAAGGTCGAAGCTTGCAAAATGGTTCATGGAGCCCTTTTTTGAGGAGTTAATTGTTGGTTGTTTTGTAAGGGTTGGTATTGGTAGATCAAAGTCTGGGCCCATGTACAGGCTCTGCATGGTGAAAAATGTTGATGCCTCAGATCCTGATCGGCAGTATAAGTTAGAGAATAAAACAACATACAAGTACTTGAATCTTGTTTGGGGAAATGACACTTCTGCTGCAAGGTGGCAAATGGCTATGGTTAGCGATTCTGCTCCGCTCGAGGAGGAGTTTAAACAGTGGGTTAAGGAAGTGGAGCGAAATGGTGGCCGGATGCTGATGAAGCGAGATGTGTTGGAAAAAAAGCAGGCCATACAAAAGATCAACACATTTGTTTACTCAGCAGCTACTGTGAAACAGATGTTACAAGAGAAAAAATCCACCTCATCGAGGCCACTAAATATTGCAGCCGAGAAGGACCGGTTGAGAAGGGAATTGGAAATAGCACAAAGTAAGAAAGATGAAGCTCAAGTAGAGAAGATCAAGACAAGACTGCAAGAATTGGAGGCATCCCGGCAAGCTCGGGAGAAGGATGCCAAGGCTTTGAAGCTTGCTGAGATGAACAGAAAGAACAGGTTCGAGAACTTAAAAAATGCTTCCGAATTGAAGCCAATAAATACAGTTCTGAAAGCCGGGGAGGCNGGTTATGATCCCTTTTCAAGGAGATGGACTAGACCAAGAAACTACTATGATTCAGAACCAGGTGAAGGGGCTGCTGCGGGAAATAACAGTACTATGGAAACAGCTGTGGCAGCAGAGGNTGGCAATGGCATGGTGGCCACTGCNGCGGCTTTGGAAGCTGCTGCTGATGCTGGGAAGTTAGTAGACACAAGTGCTCCAGTGGATCAAGGGACAGAGTCAAATGTGATGCACAATTTTGAGCTGCCATTATCATTGGCCACACTCCAAAAGTTTGGTGGAGCACAAGGAGCTCAGGCAGGGTTTATTGCGAAAAAGCAGAGGATAGAAGCAGTTGTTGGATTTCGAGTCCCGGAAAATGACGGAGGGAATCATCCGCTGACACTAACAGTTAGTGATTACAAGAGAAGAAGAGGGCTTCTTTAGAATTTGTTGAAGTAACAATTTTTCATCAGGCTGACCTGACTCTTTTTATAAGGCGAAGTTGGTTTCTATTATCTGCAGAACTGTTGTTTTGCCCGTACATGACTAAATATTTTGAAGCTTCTTTTGAAGTGATGTCATCGAGTTTCTTGTTTCCTTTTTTCCCTTCCCATAATTTAAAGAAAATTGACAAATCCATCCAAGTGTACTATGTTTATATGATTTAATATTGGTCTGGATGCTTGGAAGAGAGCTGGATAGTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00054	239800	242592	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006352 DNA-templated transcription, initiation

GO:0016570 histone modification

cellular_component
GO:0005634 nucleus

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000054s00005331.1	PF03126.13	Plus-3	291	399	3.30E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.035
SRR1783600	control	4.067
SRR1783602	moderate drought stress	4.184
SRR1811619	moderate drought stress	4.171

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.466
DRR006520	Root Summer glycyrrhizin high producing strain	4.457
DRR006521	Root Winter glycyrrhizin high producing strain	2.978
DRR006522	Root Winter glycyrrhizin high producing strain	2.930
DRR006523	Root Summer glycyrrhizin low producing strain	5.111
DRR006524	Root Summer glycyrrhizin low producing strain	5.285
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.385
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.426

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.773
SRR2868004	Drought Stress (root)	6.433
SRR2967015	Control (root)	6.840

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.186
SRR9715740	Leaf	4.917
SRR9715741	Leaf	2.382
SRR9715739	Root	0.869
SRR9715742	Root	4.669
SRR9715743	Root	4.030

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.557
SRR8749028	MeJA induced 9h	11.024
SRR8749029	MeJA induced 9h	6.601
SRR8749030	Uninduced	1.421
SRR8749031	Uninduced	1.326
SRR8749032	Uninduced	1.206

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.080
SRR8400027	Control - Root	5.926