Gene detail

Gene detail information of Glyur000054s00005323

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G15520.1	2.00E-93	pleiotropic drug resistance 12
NR	XP_003625365.1	4.78E-159	Pleiotropic drug resistance ABC transporter family protein [Medicago truncatula]
COG	YP_003900884.1	6.00E-06	ABC transporter-like protein [Vulcanisaeta distributa DSM 14429]
Swissprot	tr\|Q76CU2\|PDR1_TOBAC	5.00E-120	Pleiotropic drug resistance protein 1
trEMBL	tr\|A0A072U2R0\|A0A072U2R0_MEDTR	2.00E-156	Drug resistance transporter-like ABC domain protein {ECO:0000313\|EMBL:KEH23979.1}

Sequence

Transcript Sequence

>Glyur000054s00005323.1
ATGGAGAGTGGTGAGGGGAGTTTCAAAATATCATCCCTTAGATGGAACAGTGGCATGGATAATGTCTTCTCAAACTCTATTAACAGGGAGAATGATGATGATGAAGAAGAAGCTCTCAAATGGGCTGCAATTCAGAGGCTTCCCACTGTTGCACGCTTGAGGAGAGGCTTATTGACTACCCCAGAAGGGAATGCCAATGAAATTGATGTCCACAAACTTGGGTTGCAAGAAAGGAGATATCTTCTTGAAAGACTGGTGAGAGCTACTGATGTTGACAATGAGAAAGTTGGAATTGATATTCCTACAATAGAAGTTCGATTTGAGCACTTGAAAGTCGAAGCACAAGTTCATGTTGGAAGGAGAGCTTTGCCCACTGTCACTAACTATATGCTTGATATGGTAGAGGCTCCGTTGAACTCTATACTAAGAAGAAGAAGACAACATCTGAATATTCTCNGGGATGTTAGTGGAATAATAAAGCCTGCCAGGATGACATTGCTCTTGGGCCCTCCAAGTTCTGGAAAGACTACACTCCTGTTGGCCTTGGCTGGAAAACTTGATTCACAGCTAAAGTTCACTGGAAAGGTGACTTATAATGGTCACGGAATGAATGAGTTTGTACCCCAAAGAACCGCTGCTTATGTCAGTCAAAATGATCTTCACATTGGAGAATTAACCGTCAGAGAAACCTTGGCCTTCTCAGCAAGATTCCAAGGTGTTGGGCCTCGATATGATATGCTAGCAGAGCTAAAAAGTGGGGGATATATTGGTGGGAACATCACAGTTTCTGGCTATCCAAAGAAGCAGGAAACTTTTGCAAGAATTTCTGGGTACTGTGAGCAAAATGATATACACTCTCCTCATGTTACTGTCTATGAATCCTTGNTCTATTCAGCATGGCTCCGATTGCCTGCAGAAATTGATACCGAAACTAGGAAGAGAATTCCTATATGGTGGAGATGGTTCTATTGGCTAAATCCAGTAGCTTGGACTTTAAATGGGTTGGTGACTTCACAATTTGGAGACATAAAGAACAATGTTGAGTTTTATGGAGAAAGTGTTCCAGTACAAGAATTTTTGAAGAATTACTTTGGTTTCAAGCATGATTTATTGGGAGTGGTTGCTATTGTAGTTGTTGGGAGGAGTTCTCGGGTAGGCAATAATCCATCACTTAGGAGGAACAGTGACGTGGACAATGGCTTCTCAGAATCTATTAACAGAGAGAATGATGATGATGAAGAAGAAGCTGCTCTCAAATGGGCTGCAATTCAGAGGCTACCCACTGTTGCACCTGGAAGAAAAACTGGAGGGTATATTGGTGGGAACATCGCAATTTCTGGCTATCCAAAGAAGCAAGAAACCTTTGCAAGAATTTTTGGATACTGTGAACAAAATGATATCCATTCTCCTTATGTTACCGTATATGAATCCTTGCTCTATTCAGCATGGCTCCGATTGTCTGCTGAAATCAATGCTGAAACTAGGAAGGGTGGTGGGGGTAGTTTCAGGATTGGTAGTTCATCACTTTGGAGGAACAGTGATGCTGCTGAGATCTTCTCNAACTCTTTCCACCAAGAGGATGATGAAGAAGCTCTCAAATGGGCTGCCATTCAGAGGCTTCCCACNTTTGCACGTTTGAGGAAAGGCTTGCTCACTTCACCTCAAGGGGAAGCCACTGAGATTGATATCAAGAGACTTGGGTTGCAAGAAAAGAGAGATTTGCTTGAAAGATTGGTGAGACTTGCTGAAGAGGACAATGAGAAAGTTGGAATTGATCTTCCTACAATAGAGGTTCGATTTGAGCACCTGAACATTGAAGCAGAAGCTCATGTAGGAGGCAGAGCTTTGCCTACCTTCACTAACTTCATGGTTAATATAGTGGAGGGCCTATTGAACTCTCTCCATATACTTCCAAGTAGAAGCCAACATATAAATATTCTCCGGGATGTTAGTGGAATAATAAAGCCTTCCAGAATGACATTGCTTCTGGGCCCTCCAAGTTCTGGAAAAACCACACTCCTGTTGGCCTTGGCTGGCAAACTTGATCCAAAATTAAAGTTCTCTGGAAAGGTGACTTATAATGGTCATGGGATGAATGAGTTTGTGCCCCAAAGAACCGCTGCTTATGTCGATCAAAATGATCTTCATATTGGAGAGATGACTGTTAGAGAAACCTTGGCCTTCTCAGCAAGAGTCCAAGGAGTTGGGCCTCGTTATGACTTGCTAGCAGAATTGTCCAGAAGAGAAAAACAGGAAAATATCAAGCCTGATCCAGATATTGATGTCTACATGAAGAAGCAAGAAACCTTTGCAAGAATTTCTGGTTACTGTGAGCAAAATGATATCCACTCTCCTCATGTTACNGTCTATGAATCCTTGCTCTATTCAGCATGGCTCCGATTGTCCCCGGACATTAATGCTGAAACCAGAAAGGTTGCTTGGAGTTTGTATGGATTGGTGGCTTCACAATATGGAGATATGAAGCACACCATTGAATCCAGTGATGGAAGGCCAACAGTGGAAGGNTTTGTGAGAAGTTACTTTGGTTTCAAGCATGATTTTCTGGGAGTGGTTGCAGCTGTCATTGTTGCATTCCCAGTAGTTTTTGCTCTGGATGTTCCCCCCCCTAACCAAGGAAAGATCCACAGAGCTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00054	165943	202115	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000054s00005323.1	PF14510.1	ABC_trans_N	64	131	3.70E-09
Glyur000054s00005323.1	PF00005.22	ABC_tran	153	251	7.80E-07
Glyur000054s00005323.1	PF14510.1	ABC_trans_N	556	625	2.60E-11
Glyur000054s00005323.1	PF00005.22	ABC_tran	647	735	3.80E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.996
SRR1783600	control	1.042
SRR1783602	moderate drought stress	1.641
SRR1811619	moderate drought stress	1.518

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.213
DRR006520	Root Summer glycyrrhizin high producing strain	0.207
DRR006521	Root Winter glycyrrhizin high producing strain	0.361
DRR006522	Root Winter glycyrrhizin high producing strain	0.199
DRR006523	Root Summer glycyrrhizin low producing strain	0.271
DRR006524	Root Summer glycyrrhizin low producing strain	0.198
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.394
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.514

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.395
SRR2868004	Drought Stress (root)	52.789
SRR2967015	Control (root)	9.578

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.496
SRR9715740	Leaf	0.139
SRR9715741	Leaf	0.477
SRR9715739	Root	1.406
SRR9715742	Root	2.552
SRR9715743	Root	2.293

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	49.734
SRR8749028	MeJA induced 9h	111.560
SRR8749029	MeJA induced 9h	135.361
SRR8749030	Uninduced	291.141
SRR8749031	Uninduced	413.428
SRR8749032	Uninduced	147.089

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.328
SRR8400027	Control - Root	8.479