Gene detail information of Glyur000054s00005319.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G20370.1 | 0 | Exostosin family protein |
| NR | XP_003553511.2 | 0 | PREDICTED: xyloglucan galactosyltransferase KATAMARI1-like isoform X1 [Glycine max] |
| Swissprot | tr|Q7XJ98|KATAM_ARATH | 0 | Xyloglucan galactosyltransferase KATAMARI1 |
| trEMBL | tr|G7KYE9|G7KYE9_MEDTR | 0 | Xyloglucan galactosyltransferase KATAMARI-like protein {ECO:0000313|EMBL:AES81610.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00054 | 113614 | 115371 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT47 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000054s00005319.1 | PF03016.10 | Exostosin | 125 | 466 | 2.10E-82 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 58.206 |
| SRR1783600 | control | 61.705 |
| SRR1783602 | moderate drought stress | 28.239 |
| SRR1811619 | moderate drought stress | 28.188 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 47.197 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 45.873 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.591 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.035 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 46.165 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 48.831 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.091 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.092 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 42.625 |
| SRR2868004 | Drought Stress (root) | 32.854 |
| SRR2967015 | Control (root) | 38.458 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 29.574 |
| SRR9715740 | Leaf | 19.985 |
| SRR9715741 | Leaf | 29.066 |
| SRR9715739 | Root | 56.095 |
| SRR9715742 | Root | 146.676 |
| SRR9715743 | Root | 125.538 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 119.656 |
| SRR8749028 | MeJA induced 9h | 145.972 |
| SRR8749029 | MeJA induced 9h | 134.528 |
| SRR8749030 | Uninduced | 116.183 |
| SRR8749031 | Uninduced | 67.679 |
| SRR8749032 | Uninduced | 89.747 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 35.368 |
| SRR8400027 | Control - Root | 44.532 |