Gene detail

Gene detail information of Glyur000054s00005317.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G28650.1	0	Leucine-rich repeat transmembrane protein kinase family protein
NR	XP_007162602.1	0	hypothetical protein PHAVU_001G165100g [Phaseolus vulgaris]
COG	YP_004775215.1	1.00E-59	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9M0G7\|PXL2_ARATH	0	Leucine-rich repeat receptor-like protein kinase PXL2 (Precursor)
trEMBL	tr\|V7D099\|V7D099_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW34596.1}

Sequence

Transcript Sequence

>Glyur000054s00005317.1
ATGAGAATGAAGAAGAGCAAGATGCAAATGAAAGTCCAGTTTTTCATCTTCTTCTGTTGCATTGGTTGTTTCTCTTACAGTTTTGCTGCTGCTGCTAATGATGAAGTATCAGCTTTGCTTTCTATAAAAGCAGGTCTTGTTGATCCATTGAACACCCTGCAGGATTGGAAACTGGTTCACAAAGCACTTGGAAATGATGCAGCTCATTGTAACTGGACAGGCGTCACATGCAACTCAGCTGGAGCTGTAGAGAAGCTTGATCTCTCCCACAAGAATCTCAGTGGTATAGTATCCAATGATATACAAAGACTTAAGAGTCTTATTTCTCTCAACTTGTGCTGCAATGCTTTTTCATCACCATTGCCAAAATCCATAGCCAATCTCACCACACTGAACAGTCTTGATGTAAGCCAGAATTTCTTCATTGGTGAGTTTCCATTAGGCCTCGGAAGGGNGTGGCGACTTACAGCCTTAAATGCATCCAGCAACGAGTTCTTGGGTTCACTTCCTTGGGACCTTGGAAATGCCACTTCCTTAGAGATGCTGGATCTCAGAGGCAGTTTCTTTGAAGGGTCAATTCCAAAATCATTCAGTGACTTGCATAAGTTGAAGTTCCTTGGTCTATCTGGGAATAATCTCACTGGGAAAATTCCTGGAGAACTGGGACAACTTTCATCACTGGAGNATATGATCCTTGGCTATAATGAATTCGAAGGTCGGATTCCGGCAGAGTTTGGAGACCTCACNAGCCTTAAGTATCTTGATTTAGCAGTAGCCAATCTTGGTGGTGAGATTCCAGGTGAACTGGGAAAGCTCAAGCTACTGAATACAGTTTTCTTATACAACAACAATTTTGAAGGAAGAATTCCACCAGAAATTGGCAACATGACTTCTTTGCAGTTGCTGGATCTTTCTGATAACATGTTGTCAGGAAAAATTCCAGCTGAGATAAGTCAGCTGAAGAATTTAAAGCTTCTGAACTTCATGGGCAACCAGCTATCTGGGCCTGTGCCTTCTGGCCTTGGGGATTTGCCTCAACTGGAGGTGCTTGAGCTATGGAATAACTCCTTGTCAGGGCCATTGCCTAGTAACCTTGGCAAGAATTCACCATTGCAATGGTTGGATGTATCATCCAATTCACTCTCTGGAGAGATTCCAGAAACTCTTTGCAGCCAGGGCAATCTCACCAAGCTTATACTTTTCAACAATGCTTTCTCTGGTCCAATTCCATCAAGTCTATCAATGTGTCCTTCACTTGTTCGTGTTCGAATGCAGAACAATTTTCTTTCTGGGATAGCTCCTGTTGGTCTTGGCAAGCTCGAGAAGCTTCAAAGGTTAGAATTGGCTAACAATAGTCTCTCTGGCGGAATTCCAGATGACATTGCTTCTTCCACATCCCTTTCTTTCATTGATCTCTCAAGAAACAAATTCCATTTTTCTCTTCCTTCCACCATCCTTTCCATTCCAAACCTGCAAGCTNTCATGGTCTCCAACAACAACTTGGAAGGTACAATCCCAGACCAATTTCAGGACTCTCCCTCACTTACTGTTCTTGACCTCTCGTCAAACCATTTAACTGGAAGTATTCCATCAAGCATCGCTTCATGTCAGAAATTGGTAAACTTGAACCTGCAAAATAACCAATTGACTGGTGAGATCCCAAAAGCATTAGCTAACATGCCTACATTGGCCATGCTTGATCTTTCCAACAATTCTCTGACTGGCCAAATACCTGAAAGCTTTGGTTTATCTCCAGCTCTGGAAGCATTCAATGTCTCATTCAATAAACTCGAAGGTTCTGTGCCAGCAAATGGTATGCTAAAAACCATAAACCCAAACAATCTTGTGGGCAATGCTGGNCTATGTGGTGGTGTCCTCCCTCCATGNGGCCAGAACTCTGCATACTCATCAAGGCATGCAGGCTCACATGCAAAGCACATTATTACAGGATGGATCGTTGGAATATCATCAATCCTAGCCATCGGAATTACAATTTTGGTAGCAAGATCTTTGTACGAAAGGTGGTACGCTGGCNGGTTTTGCTTTCGAGAAAGATTTTATAAAGGCAGCAAAGGGTGGCCCTGGAGACTGATGGCATTTCAGAGGCTTGGTTTTACAAGTACTGACATTCTAGCTTGCATCAAGGAGACGAATGTGATCGGCANGGGAGGTACCGGGGTTGTTTATAAGGCTGAGATACCACAATCAAACACAGTTGTGGCAGTGAAAAAGTTGTGGAGATCAGGAACTGATATTGAAGTAGGAAGCANTGATGACCTTGTTGGAGAGGTGGACCTTTTAGGGAGGCTAAGGCATAGGAACATCGTTAGACTATTAGGATTTCTCCATAATGACACCGATGTGATGATAGTTTATGAATTCATGCACAATGGTAACCTTGGAGATGCCTTGCATGAATATGGATATGCCTTGAAGGTGGATGAAAAGATTGATGTTTACAGTTATGGAGTGGTTTTGTTGGAGCTTNTCACAGGAAAGAGGCCTTTAGATCCGGAATTTGGAGAGTCTGTAGACATTGTNGAGTGGATTAGGAGGAAGATAAGGGACAACAAGTCTCTAGAGGAAGCATTAGACCCAAGTGTAGGAAACTGCAGTCATGTTCTAGAAGAGATGCTTTTAGTTCTAAGAATAGCACTTCTTTGCACTGCCAAGCACCCCAAGGACAGACCCACCATGAGGGATGTCATAATGATGCTTGGAGAGGCAAAGCCTCGGAGAAAGAGTAGTGGCACTGGCNACAATGAAACATTAGCAGCTAACAACAAAGAGATGCCAGTTTTTAGCACATCACCNGTTAATGGCCTTCTGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00054	99913	103215	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000054s00005317.1	PF08263.7	LRRNT_2	32	78	1.20E-10
Glyur000054s00005317.1	PF13855.1	LRR_8	177	236	1.30E-06
Glyur000054s00005317.1	PF12799.2	LRR_4	297	334	1.90E-07
Glyur000054s00005317.1	PF13516.1	LRR_6	369	391	0.9
Glyur000054s00005317.1	PF13855.1	LRR_8	417	476	1.50E-06
Glyur000054s00005317.1	PF13855.1	LRR_8	489	549	2.90E-09
Glyur000054s00005317.1	PF00560.28	LRR_1	565	582	0.26
Glyur000054s00005317.1	PF00069.20	Pkinase	716	807	1.40E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.869
SRR1783600	control	5.721
SRR1783602	moderate drought stress	3.947
SRR1811619	moderate drought stress	4.019

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.190
DRR006520	Root Summer glycyrrhizin high producing strain	2.079
DRR006521	Root Winter glycyrrhizin high producing strain	0.401
DRR006522	Root Winter glycyrrhizin high producing strain	0.369
DRR006523	Root Summer glycyrrhizin low producing strain	1.478
DRR006524	Root Summer glycyrrhizin low producing strain	1.454
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.163
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.196

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.428
SRR2868004	Drought Stress (root)	12.159
SRR2967015	Control (root)	12.288

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.639
SRR9715740	Leaf	0.193
SRR9715741	Leaf	0.246
SRR9715739	Root	0.986
SRR9715742	Root	2.960
SRR9715743	Root	1.801

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.654
SRR8749028	MeJA induced 9h	0.190
SRR8749029	MeJA induced 9h	0.331
SRR8749030	Uninduced	0.020
SRR8749031	Uninduced	0.001
SRR8749032	Uninduced	0.040

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.459
SRR8400027	Control - Root	8.198