Gene detail

Gene detail information of Glyur000054s00005314

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G17940.1	2.00E-29	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_004493825.1	8.15E-140	PREDICTED: uncharacterized protein LOC101502107 isoform X1 [Cicer arietinum]
COG	YP_004509659.1	2.00E-11	hypothetical protein PGTDC60_0936 [Porphyromonas gingivalis TDC60]
trEMBL	tr\|I1JP77\|I1JP77_SOYBN	5.00E-130	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G32430.5}

Sequence

Transcript Sequence

>Glyur000054s00005314.1
TTGCAACTTTATGGGTTGCATGTGCGGAAGACAGAGGGGGTCGCGGGCGCCTCCGACGTTGCCTCCATCGTACTCCTTTCCTCCGATTACGCCCGCGAACACGAACCCAATCACGGTGGAGCCCCTAATCCTCCCTACACCGGCGCTGAGCACACTTTGCACTGGGTCGCCGACTCCACCCACCGGATTGCACAAGGGACAGCAGCCACATATCCTCCTGAATCAGAAAGCATGATGCTAAGAAGCTCATCAACACCAGTTCTTGGCTCCCTCCTCTCTTCTTCCTTCACAGATAGTCCTAACCACCCCGAAGTATGCCATGCAATCAAGCATCTACCACCAACTAGTGCACACCACAAGCTCTCTCTCCATCAAACAGGGTCCTTGAATCTCTTCTGCACTTCTCCAATCTCACCCTCCATTTCTGACCTTAACAAAGGCTTCAGAAGAGTTCAATCTGACGGCAACTTGCAAGACTTGGCCTACTCTTCTTCTTGCAACAACAGCAGCAACAACAACAACGAAGACAGATTATTCAATTATACAACAGACCCTCTTCCTCCTAAGAGGTTTTCAGCGAGACAAAGATGCTTGGCACTTGAGACCATCCCATCTTTCAACCTTTCTAGGCACAAAGGCTTGCGGGTAGAAGAGGAAGATGAAGAAAGTGACTTTGAAGATGATTGGGAAGAAAGAGGAGACTTGGAGGAAGAGGAACTGAAGAGTGGCAGTGGTATGAATATGATATTGAGGACTGAAGAAGTGAGGGTGAAGGATGGAGTTTGTAGGGTGGGTTTTGGTGACAATATGGAAGGGGTTGGTGGTGGTGGCAATAAAGGTATGTATCTTGCAAAGGGGCTTGGTGTTGATGTGTGTGGCGATGGCATGGGTGGCTGCAGAGGTAATGGTGGTGGTGGAGGCTATGGCTATGGAGGTGGTGATTCCAATTCCATGAATGANGGAGATGGTAATAATAATCACGATGGGGTGGAAGAATACTACAAGAAAATGGTGGAGGAAAATCCAGGGAATCCATTGTTTCTGAGGAATTATGCTCAGTTCTTGTATCAGTACAAACAAGACGGTGAAGGAGCGGAGGAGTATTATTCGCGTGCCATACTAGCGGACCCAAAAGATGGAGAAGTGTTGTCACAGTATGGGAAGCTGGTATGGGAGGTGCATCATGACCAACAACGAGCCTCCACCTACTTTGAACGAGCTGTACAAGCCTCTCCTCAAGACAGCCACGTACATGCAGCATATGCTTGCTTCCTTTGGGACACAGAGGAAGACGAGGATGGTTGCAATGAGCCACAATGTTTACCCAATCATTTCCACCTGGGAGCTATGGCTACCACTACTGCAGGTGTTTAGAAGAGATGAGATATGATATGATGAATTGATGAAGAAACAGCTAGCAATTGCCAAAAGCAATTTCAGATGGACGCAAACAAGGGTCTCTTGATACGCATAGGAATTCTTCTTTCTATTGAGGCCAGTGTTGTACAGGTTTCTGTTGAGAAACAAGCACGTTTTCTAGTAACTGAAATCACAAACTCAGGTTGTAGCTTTGAGTTTCTTTCGCAAAGTCATTTAGACGTGCTGCAAGTTTGTACACAGACCATTTAATTTAATTAATCCATGTACTGATTGATAAAATCTCATATTTGGGACGTTGATTGGCATCAAAGACACTCCAACTTAAGAAGGAAAAACAAGAATACAGAAAGAAAATGGCATGTACAGAGGAGATATACCCCATCATCGCTAAACAGATAACAGGGCAGGCAGGGAACAACTGAGGGTTGTGTTTCCTAATAATTCCAACAGTGCTCCAATAGCAATAGCCAAGGCTTTGCAAGATAACAAGAAAATGTTCTGGAAGACCTCAACCTGAACGGAATTTTGAATAACTGNGCTTTTCCTTTTTCTCCAAAAGTGAAAAGTCGGGTACCATTTATGTAAGCGGTGACGCTCAAGATCACAGCGATGGCTGTGGAAAGCTTGGTCTCAGCACGGAGAATATTGTCAATGTTGAATTTGACTTCTTTAAAGAGAAAAAGTGCCCTTAACAAATGATAAAATACAACAATAACCATGAATTAAAAAATCAAGGGCAAAAAAATATAGTAAACTACATACCTTACAAATCATAGATTTGTTAAAATCTTAACAGTTGATTTTCAACTNATGATTATAATTCTATATTTTCAAATCAATGATTAAACCTTTTATGGAGAGGTAACAGATAAGAATGGAGCGGAAGCAATCTCATTGCAGGAACTTTGTTAAAGTGTGTGTATATTTTAGTTTTTGAAGGGAATTATAGTCACTAAAAAACAGGTTTGTCNATCTCCATGTTCTAAAACGCAAAACAAAATTGAAAAGAAAACATTAAACTATAAGATTTCCATGGTACTATCAAAACAAGTCTTAACAAAGGCACTTGGTGGAAAAAAAAACTCAAAGCATTGTGACATCTGACAATTCAGCACAACGTAATTGATGTCTAAAGTCTAAAAAACATTTTTTTCTCCTTTTGACACAATTTCTCATTTAAAAAGCTCCACAATCCTGACATGGGGGCAATACAAATAACCAAAATTTCCCACCTGAATGGCATCATAAAATTCATTCAAAGGGAACTAACTGATCTATACTTGCAAAACAAAGTAAGTCTCAATGGCTNTTAAACTTCAAACGACACAACGTAAGACTCCTTTTCATGAAACCACAGAAGGAAAATNTAATGCATCAAATATCGAATCAAGCTCAGATTTCACTAATTGTTTAAACCCTTGAATAGCATTTTCAAGCATGCTTTTCTGACATTTTCCTATCGTGAACCACGCTGAAGATAACCATCACCTCTTTGCCTGGTATAGTCTGAAGTATCCTGATTACTTCCCCTTCCCAAGCTCCTAGCACCAAAACGCCCTCTTGGGGCATCTGTTTGATAACCACCTCTGCCTCTTCCCCTTCCTCCTCCTGATCAAAACAAAGGAAATGAATATCAATATTACAACAAATATTTCCTATTTTCATCAGAAACCAGAAAAGACAAAACACTCAACAACTAAAGAAAGGCAATACTAAAAGCATTTAAAGTTTATATTACAAAGATACCAATTCAAAATATTACGTAGAAGTAGTGTCATTGGAGAAAGAAAACAAGCAGTAAAAGAGGAGGACATGGCAAATTTTGTCCTTCACAGAAGCACGACAGCTGCGGTAATTTATAGGCAATTCCCAACATCAGCCATTCCTTTCTAATACAATAGCAACAAAAAACTCTCAGAAAAAAGTGTCTGCCTTTATTAATCACCTCCCAGCNTATAAAACCTCCAGTCCTAAACACGGTACTCTCAACCAACCAGAACCCATACAAATATGCCCACATCTAAATTTCATAGCAAACAAAAACTATTAATGATAGAATTTCAGCTCCCCACAAGCCATCATCAAGTACCTAAATAATTGCAATCACTGTTACATCTCATCACACCCAGATCCTATGATGTATCGCATATAGAACAGCAACAATACAGTATTTTAAACAGTATCCCCATAGGTTTGTAATGTTATCACAGCAACCAGTGCCATTAGCATGTACAGCCATAAGTCTCTACTCTCTAATAATATGCCATGCTGTATAGAACTTGGGTCCTGTTTGGATACCAGTCATAAGTGCTTATTGGAGTTTATCCAGTGGATAAACTCCAACGGCTTTCGGTACTACTAAATACATAGTGCTACCAAAGCAACCAGTGCCCTAGCAAGTATAGGCACAGCCATAAGTTCAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00054	83852	88911	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006396 RNA processing

cellular_component
GO:0005622 intracellular

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000054s00005314.1	PF13414.1	TPR_11	356	412	2.50E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.201
SRR1783600	control	23.811
SRR1783602	moderate drought stress	30.540
SRR1811619	moderate drought stress	26.345

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	46.209
DRR006520	Root Summer glycyrrhizin high producing strain	45.066
DRR006521	Root Winter glycyrrhizin high producing strain	9.629
DRR006522	Root Winter glycyrrhizin high producing strain	9.551
DRR006523	Root Summer glycyrrhizin low producing strain	35.633
DRR006524	Root Summer glycyrrhizin low producing strain	36.379
DRR006525	Leaf Summer glycyrrhizin high producing strain	93.643
DRR006526	Leaf Summer glycyrrhizin high producing strain	97.865

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.881
SRR2868004	Drought Stress (root)	12.644
SRR2967015	Control (root)	18.381

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	144.879
SRR9715740	Leaf	119.958
SRR9715741	Leaf	230.921
SRR9715739	Root	5.536
SRR9715742	Root	18.607
SRR9715743	Root	16.540

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.372
SRR8749028	MeJA induced 9h	11.129
SRR8749029	MeJA induced 9h	12.976
SRR8749030	Uninduced	7.205
SRR8749031	Uninduced	8.126
SRR8749032	Uninduced	9.088

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.707
SRR8400027	Control - Root	13.279