Gene detail

Gene detail information of Glyur000054s00005313

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G43960.1	9.00E-84	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain
NR	XP_003521311.1	0	PREDICTED: ras GTPase-activating protein-binding protein 2-like isoform X1 [Glycine max]
trEMBL	tr\|I1JP73\|I1JP73_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G32420.1}

Sequence

Transcript Sequence

>Glyur000054s00005313.1
CGCCGATAGATAGATTATAAAACGAAGAAAGAATCACTCACTCACTCGCCACCACCTCCCCTACCCTATTACTATTATTACTTTTCATTTACCAGCGCGCACTTCTCTCAAATCCCCCCCGATCTATTCGGATAACTTTCCTTCGATTCCTTCCCTTCTTTCTCTCATCATTCTCTCACCAAACCTCTCTCTCTCTCTCTCTCTCTCGCATCGTTGAGCTGTTGCTTTGAGGGGTTTTGGGTAAACACCAACACCAACACCAACAGAAATAGCTTTTGCTCCAGTCCCCTCTTTCCCCCTTGTGTCTTCAGAGATTTAGGGTTTTCGGTCACTCACCTTTCTCCTAGATCTGCCACCAGCGCTAGGAGAAACACTGCATGTTCCTTCTAGTCTAGCGCTTAACTACCCAAAAGGAAAAAAAAAAATGGCGTCTTCGTTTCAGGGTTCCTTTAGTGCTCCCCAGGTGGGTTCTTACTTCGTGGGACAGTACTATCAAGTCCTTCGCCAACAACCCAGTCTCATTCATCAGTTCTACTCCGATTCCAGCACCATGATTCGCGTTGATGGTGATTCCACTGAGACCGCACCCGATGTGTTGCAAATTCATTCGATTGTGATGTCACTGAATTTCACAACGATTGAGATCAAGACGATCAATTCTCTTGACTCTTGGGATGGGGGAGTGCTTGTGATGGTTTCGGGTTTTGTCAAGATAAAGGATGTCAGTGGGAAGCGGAAGTTTGTTCAGACCTTCTTCCTTGCTCCTCAGGAGAAGGGTTATTTCGTACTGAATGATATATTTCATTTCGTGGATGATGAAGTAACGGACCCAAATCTGGTGGTGCCAGTGGCATCTGAGAAGTTTGACACACAGCCGCATGTATCTCCTTCTCTGGCAGAGCCACCAGCAGCTTCGGACTATGATTTGGAGGAAGAAGCTAGGGAATATGTAAACTCAGTTCATATTGATGATGATCCAGTGGACAAGTATAGTCTTCCTGAGCAGCAGCAGCAGCAGCTACAAGAAGATCTTGAAACTGAAGTTGTGGTGGAGGAAACTCCTGCTCAGGAGGCATCTCCACCCATGCATAATGTTGCACATACCATCCATGAAACCCCTGTTGCTCTTGTGGAAGAGTCTTTTGAGGAGCCTCCTAAGAAAACTTATGCATCTATTTTACGAGTCTCCAAAGGGCAATCAGTGTTGTCAGCTGCTCCACAACATGCTCCACAATATTCCTTCAAAAGCGCCCCTCCTCCTTCCGAGTTGAATCATGTAGCACAGCCTGCTGTTCAGCAGTCAAGCTCTGCTTCTGCGTATGTTTCTGAGTCTTCGGCTGAAGCAGCAGAGGAAGGCTANGGATTTGAAGAAGAAGAAGAAGTAACATCTGTCTATGTGAGAAACTTGCCTGCTAATGTTACCGAAGCTGAGATTGAGGAGGAATTTAAGAATTTTGGCAGAATTAGGCCTGATGGAATATTCATAAGGGTCCGAAAGGAAATTGGAGTTTGCTATGCATTTGTGGAATTTGAAGACATTGTTGGCGTTCAAAATGCACTTCAGGCTTCTCCCATACAATTGGCTGGAAGACAAGTATACATAGAGGAGCGAAGACCAAACAGTGGCAGTGGAGCTCGAGGAGGAAGAGGAGGAAGGGGAAGAGGCAGAGGTGGTTATCAAACAGATGCCCCAAGAGGGCGTTTTGGTGCTAGGAGCTTGGGAAGGGGAAGTAATCAGGATACTTCAGACTATACCAGGCAAAGAGGTGATGGTTATCTTCAGCGTGGTTCACGATAGGAAAATGTCAGAAAAGCATGCTTGAAAATGCTATTCAAGGGTTTAAACAATTAGTGAAATCTGAGCTTGATTCGATATTTGATGCATTANATTTTCCTTCTGTGGTTTCATGAAAAGGAGTCTTACGTTGTGTCGTTTGAAGTTTAANAGCCATTGAGACTTACTTTGTTTTGCAAGTATAGATCAGTTAGTTCCCTTTGAATGAATTTTATGATGCCATTCAGGTGGGAAATTTTGGTTATTTGTATTGCCCCCATGTCAGGATTGTGGAGCTTTTTAAATGAGAAATTGTGTCAAAAGGAGAAAAAAATGTTTTTTAGACTTTAGACATCAATTACGTTGTGCTGAATTGTCAGATGTCACAATGCTTTGAGTTTTTTTTTCCACCAAGTGCCTTTGTTAAGACTTGTTTTGATAGTACCATGGAAATCTTATAGTTTAATGTTTTCTTTTCAATTTTGTTTTGCGTTTTAGAACATGGAGATNGACAAACCTGTTTTTTAGTGACTATAATTCCCTTCAAAAACTAAAATATACACACACTTTAACAAAGTTCCTGCAATGAGATTGCTTCCGCTCCATTCTTATCTGTTACCTCTCCATAAAAGGTTTAATCATTGATTTGAAAATATAGAATTATAATCATNAGTTGAAAATCAACTGTTAAGATTTTAACAAATCTATGATTTGTAAGGTATGTAGTTTACTATATTTTTTTGCCCTTGATTTTTTAATTCATGGTTATTGTTGTATTTTATCATTTGTTAAGGGCACTTTTTCTCTTTAAAGAAGTCAAATTCAACATTGACAATATTCTCCGTGCTGAGACCAAGCTTTCCACAGCCATCGCTGTGATCTTGAGCGTCACCGCTTACATAAATGGTACCCGACTTTTCACTTTTGGAGAAAAAGGAAAAGCNCAGTTATTCAAAATTCCGTTCAGGTTGAGGTCTTCCAGAACATTTTCTTGTTATCTTGCAAAGCCTTGGCTATTGCTATTGGAGCACTGTTGGAATTATTAGGAAACACAACCCTCAGTTGTTCCCTGCCTGCCCTGTTATCTGTTTAGCGATGATGGGGTATATCTCCTCTGTACATGCCATTTTCTTTCTGTATTCTTGTTTTTCCTTCTTAAGTTGGAGTGTCTTTGATGCCAATCAACGTCCCAAATATGAGATTTTATCAATCAGTACATGGATTAATTAAATTAAATGGTCTGTGTACAAACTTGCAGCACGTCTAAATGACTTTGCGAAAGAAACTCAAAGCTACAACCTGAGTTTGTGATTTCAGTTACTAGAAAACGTGCTTGTTTCTCAACAGAAACCTGTACAACACTGGCCTCAATAGAAAGAAGAATTCCTATGCGTATCAAGAGACCCTTGTTTGCGTCCATCTGAAATTGCTTTTGGCAATTGCTAGCTGTTTCTTCATCAATTCATCATATCATATCTCATCTCTTCTAAACACCTGCAGTAGTGGTAGCCATAGCTCCCAGGTGGAAATGATTGGGTAAACATTGTGGCTCATTGCAACCATCCTCGTCTTCCTCTGTGTCCCAAAGGAAGCAAGCATATGCTGCATGTACGTGGCTGCAGATATCATCAAACCATACAAGGCAAGCTATCGTTAGAATGAATGAATGAATGAATGTGATGTCAATGAAGCAGAAACAAGACACATGATGGGTACTAACTACTAACCTGTCTTGAGGAGAGGCTTGTACAGCTCGTTCAAAGTAGGTGGAGGCTCGTTGTTGGTCATGATGCACCTCCCATACCAGCTTCCCATACTGTGACAACACTTCTCCATCTTTTGGGTCCGCTAGTATGGCACGCGAATAATACTCCTCCGCTCCTTCACCGTCTTGTTTGTACTGTTGTGGTCAAACACAACAACAACAACAAATGTTTATTGCAATCATTCATCACCAATAGGCAATAGCATAGCATCCACTAATTGATAAAACCAAGTGTTGGTGTTGAAAACGAGTATATGACTTGTTTCAAGTTATTATTATTCTGGATAAGTTGTGCAAATTGCTTAGTAATGAATGAGATTTTCAAATAGAAGTTACCTGATACAAGAACTGAGCATAATTCCTCAGAAACAATGGATTCCCTGGATTTTCCTCCACCATTTTCTTGTAGTATTCTTCCACCCCATCGTGATTATTATTACCATCTCCNTCATTCATGGAATTGGAATCACCACCTCCATAGCCATAGCCTCCACCACCACCATTACCTCTGCAGCCACCCATGCCATCGCCACACACATCAACACCAAGCCCCTTTGCAAGATACATACCTTTATTGCCACCACCACCAACCCCTTCCATATTGTCACCAAAACCCACCCTACAAACTCCATCCTTCACCCTCACTTCTTCAGTCCTCAATATCATATTCATACCACTGCCACTCTTCAGTTCCTCTTCCTCCAAGTCTCCTCTTTCTTCCCAATCATCTTCAAAGTCACTTTCTTCATCTTCCTCTTCTACCCGCAAGCCTTTGTGCCTAGAAAGGTTGAAAGATGGGATGGTCTCAAGTGCCAAGCATCTTTGTCTCGCTGAAAACCTCTTAGGAGGAAGAGGGTCTGTTGTATAATTGAATAATCTGTCTTCGTTGTTGTTGTTGCTGCTGTTGTTGCAAGAAGAAGAGTAGGCCAAGTCTTGCAAGTTGCCGTCAGATTGAACTCTTCTGAAGCCTTTGTTAAGGTCAGAAATGGAGGGTGAGATTGGAGAAGTGCAGAAGAGATTCAAGGACCCTGTTTGATGGAGAGAGAGCTTGTGGTGTGCACTAGTTGGTGGTAGATGCTTGATTGCATGGCATACTTCGGGGTGGTTAGGACTATCTGTGAAGGAAGAAGAGAGGAGGGAGCCAAGAACTGGTGTTGATGAGCTTCTTAGCATCATGCTTTCTGATTCAGGAGGATATGTGGCTGCTGTCCCTTGCTTTAATTAGGAGCACAACAANAAGTATAAACACACTGAGGAAAAACAAAAAGAAAACTTGTTTAGGAGAAAACTAGAACAGAGAAAAGCATACTGATTTGTGAAACAGAAAATGATGCTGCACAGAAGAAAATACCCAAAAAAGAAAGAAATGATGGTGGGGTTTGTGGAGGGAGGTAAAGGAGAAGAAAGCGATACCCTTTTCAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00054	80250	87982	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0005622 intracellular

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000054s00005313.1	PF02136.15	NTF2	14	127	3.30E-25
Glyur000054s00005313.1	PF14259.1	RRM_6	323	392	6.10E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	44.906
SRR1783600	control	44.970
SRR1783602	moderate drought stress	45.962
SRR1811619	moderate drought stress	44.434

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	58.081
DRR006520	Root Summer glycyrrhizin high producing strain	58.303
DRR006521	Root Winter glycyrrhizin high producing strain	30.954
DRR006522	Root Winter glycyrrhizin high producing strain	30.064
DRR006523	Root Summer glycyrrhizin low producing strain	48.820
DRR006524	Root Summer glycyrrhizin low producing strain	48.656
DRR006525	Leaf Summer glycyrrhizin high producing strain	71.321
DRR006526	Leaf Summer glycyrrhizin high producing strain	68.924

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	44.274
SRR2868004	Drought Stress (root)	35.733
SRR2967015	Control (root)	33.916

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	138.251
SRR9715740	Leaf	122.354
SRR9715741	Leaf	162.183
SRR9715739	Root	22.052
SRR9715742	Root	47.552
SRR9715743	Root	39.089

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.208
SRR8749028	MeJA induced 9h	19.785
SRR8749029	MeJA induced 9h	16.202
SRR8749030	Uninduced	10.606
SRR8749031	Uninduced	8.069
SRR8749032	Uninduced	6.223

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	31.660
SRR8400027	Control - Root	29.089