Gene detail information of Glyur000054s00005310 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G43980.1 | 2.00E-44 | plasmodesmata-located protein 1 |
| NR | XP_003625371.1 | 2.36E-130 | Cysteine-rich repeat secretory protein [Medicago truncatula] |
| Swissprot | tr|Q8GXV7|CRR56_ARATH | 3.00E-83 | Cysteine-rich repeat secretory protein 56 (Precursor) |
| trEMBL | tr|G7KXF5|G7KXF5_MEDTR | 9.00E-131 | Salt stress response/antifungal domain protein {ECO:0000313|EMBL:AES81589.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00054 | 62081 | 64495 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000054s00005310.1 | PF01657.12 | Stress-antifung | 43 | 135 | 2.00E-18 |
| Glyur000054s00005310.1 | PF01657.12 | Stress-antifung | 152 | 250 | 4.20E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.659 |
| SRR1783600 | control | 5.616 |
| SRR1783602 | moderate drought stress | 7.979 |
| SRR1811619 | moderate drought stress | 7.710 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.286 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.091 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.059 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.110 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.586 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.707 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.046 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.988 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.085 |
| SRR2868004 | Drought Stress (root) | 14.614 |
| SRR2967015 | Control (root) | 14.710 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.355 |
| SRR9715740 | Leaf | 2.250 |
| SRR9715741 | Leaf | 2.585 |
| SRR9715739 | Root | 14.958 |
| SRR9715742 | Root | 6.490 |
| SRR9715743 | Root | 7.542 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.281 |
| SRR8749028 | MeJA induced 9h | 0.075 |
| SRR8749029 | MeJA induced 9h | 0.256 |
| SRR8749030 | Uninduced | 0.197 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.348 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.067 |
| SRR8400027 | Control - Root | 9.951 |