Gene detail information of Glyur000054s00005308 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G04400.1 | 2.00E-73 | Ribosomal protein L14p/L23e family protein |
| NR | XP_004296407.1 | 7.02E-92 | PREDICTED: 60S ribosomal protein L23-like [Fragaria vesca subsp. vesca] |
| COG | YP_003483879.1 | 5.00E-41 | 50S ribosomal protein L14P [Aciduliprofundum boonei T469] |
| Swissprot | tr|P49690|RL23_ARATH | 2.00E-93 | 60S ribosomal protein L23 |
| trEMBL | tr|Q9ATF6|Q9ATF6_CASSA | 3.00E-92 | Ribosomal protein L17 {ECO:0000313|EMBL:AAK25758.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00054 | 49377 | 50434 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000054s00005308.1 | PF00238.14 | Ribosomal_L14 | 21 | 105 | 6.60E-21 |
| Glyur000054s00005308.1 | PF00238.14 | Ribosomal_L14 | 112 | 154 | 3.20E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 83.616 |
| SRR1783600 | control | 83.788 |
| SRR1783602 | moderate drought stress | 53.602 |
| SRR1811619 | moderate drought stress | 53.645 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 219.426 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 219.479 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 85.263 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 83.303 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 178.978 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 180.303 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 70.375 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 69.818 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 350.580 |
| SRR2868004 | Drought Stress (root) | 226.459 |
| SRR2967015 | Control (root) | 228.948 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 179.024 |
| SRR9715740 | Leaf | 144.702 |
| SRR9715741 | Leaf | 130.079 |
| SRR9715739 | Root | 278.197 |
| SRR9715742 | Root | 188.040 |
| SRR9715743 | Root | 221.187 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 197.614 |
| SRR8749028 | MeJA induced 9h | 64.909 |
| SRR8749029 | MeJA induced 9h | 102.060 |
| SRR8749030 | Uninduced | 12.986 |
| SRR8749031 | Uninduced | 10.476 |
| SRR8749032 | Uninduced | 21.412 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 365.170 |
| SRR8400027 | Control - Root | 336.098 |