Gene detail

Gene detail information of Glyur000053s00006481

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G49870.1	2.00E-86	ADP-ribosylation factor-like A1C
NR	KDP44509.1	2.44E-113	hypothetical protein JCGZ_16342 [Jatropha curcas]
COG	YP_001737337.1	9.00E-17	small GTP-binding protein [Candidatus Korarchaeum cryptofilum OPF8]
Swissprot	tr\|O48649\|ARF1_SALBA	7.00E-27	ADP-ribosylation factor 1
trEMBL	tr\|A0A067LJN8\|A0A067LJN8_JATCU	9.00E-114	Uncharacterized protein {ECO:0000313\|EMBL:KDP44509.1}

Sequence

Transcript Sequence

>Glyur000053s00006481.1
CTTTATGAGAAAAGAAAAAGAAAGTGGTGACTGATATCATTTTAGATTGCGAGGAAGGAGGGAATAGAAAGAAAGAAAAGCGAAGTGTGGACTGTGTAAATCGAAAAACGAAGGCATTTCCGTTGTCGGAAAACAGAACAGNGACAAATGGGGTTGTGGTTGTGGGAAGCTTTCGTCAATTGGCTACGCAGTCTCTTTTTCAAGCAAGAAATGGAGCTATCTTTGATTGGCCTTCAGAATGCTGGCAAAACATCACTTGTCAATGTTATTGCAACTGGTGGATATAGTGAAGACATGATTCCTACGGTACACTATCTTTCTTTAATCACACTGATAACTGTACAACTGGAGGATGTGGGATTTAATATGAAAAAGGTAACTAAAGGAAATGTGACAATAAAGTTATGGGACCTTGGAGGTCAACCGAGGTTTCGCAGTATGTGGGAGAGATACTGCCNTGCTGTTTCAGCTATTGTTTATGTTGTTGATGCAGCTGATTTAGACAATTTACCTGTCTCTAGAAGTGAACTCCATGACTTGTTGAGCAAACCTTCTTTAAATGAGATTCCCCTACTGGTTTTGGGCAATAAGATTGACAAACCTGGGGCTTTGTCTGAGCAAGACCTGACAGAACAGATGGGGCTGAAATCCATCAATGGTAGAGAAGTTGGTTGCTTCATGATCTCATGTAAAAACTCCACCAACATTGATTCAGTTGTTGGTTGGTTTGTAAAACATTCTAAAGCAAAGAACTGAAGCTCAAGTTCTGCTCTATGAATCTATTTGTAATGCTGTATTGCAGACTGATACCAAGGTGATTAAGTTACTGATGTTGGNGTAATACTAGTTTTCTTTTCTTTTATCTTTTCCTTTTTTTGACTGGTCTACATCAGATCAGATAGCTTGTGATTTAATCCTGTAATTTGTTATGTAGGTTTACATCCAAGTATTGTAAATTATGCTGCAAGATAATTGCTAATGCTACATGTGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00053	375985	379050	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0007264 small GTPase mediated signal transduction

GO:0015031 protein transport

cellular_component
GO:0005622 intracellular

molecular_function
GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000053s00006481.1	PF00025.16	Arf	11	196	1.30E-37
Glyur000053s00006481.2	PF00025.16	Arf	11	180	3.30E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.580
SRR1783600	control	6.640
SRR1783602	moderate drought stress	5.369
SRR1811619	moderate drought stress	5.383

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.369
DRR006520	Root Summer glycyrrhizin high producing strain	17.845
DRR006521	Root Winter glycyrrhizin high producing strain	3.751
DRR006522	Root Winter glycyrrhizin high producing strain	3.671
DRR006523	Root Summer glycyrrhizin low producing strain	14.475
DRR006524	Root Summer glycyrrhizin low producing strain	14.135
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.347
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.390

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.416
SRR2868004	Drought Stress (root)	21.252
SRR2967015	Control (root)	22.077

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.348
SRR9715740	Leaf	8.637
SRR9715741	Leaf	10.258
SRR9715739	Root	5.193
SRR9715742	Root	8.898
SRR9715743	Root	9.809

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.295
SRR8749028	MeJA induced 9h	8.012
SRR8749029	MeJA induced 9h	7.684
SRR8749030	Uninduced	7.523
SRR8749031	Uninduced	10.089
SRR8749032	Uninduced	6.880

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.075
SRR8400027	Control - Root	23.070