Gene detail

Gene detail information of Glyur000053s00006480.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G04640.2	3.00E-100	lipoyltransferase 2
NR	XP_004496872.1	4.67E-159	PREDICTED: octanoyltransferase-like [Cicer arietinum]
COG	YP_001543233.1	5.00E-48	lipoate-protein ligase B [Herpetosiphon aurantiacus DSM 785]
Swissprot	tr\|Q9SXP7\|LIPB_ARATH	4.00E-126	Octanoyltransferase
trEMBL	tr\|A0A072VQE6\|A0A072VQE6_MEDTR	2.00E-155	Biotin/lipoate A/B protein ligase family protein {ECO:0000313\|EMBL:KEH44017.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00053	372563	374082	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K03801	lipB	EC:2.3.1.181	Lipoic acid metabolism	map00785

Gene Ontology

biological_process

GO:0006464 cellular protein modification process

GO:0009107 lipoate biosynthetic process

cellular_component
GO:0005737 cytoplasm

molecular_function
GO:0016415 octanoyltransferase activity

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000053s00006480.1	PF03099.14	BPL_LplA_LipB	53	168	3.00E-11

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	3.652
SRR1783600	control	3.579
SRR1783602	moderate drought stress	3.358
SRR1811619	moderate drought stress	3.326

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.051
DRR006520	Root Summer glycyrrhizin high producing strain	5.723
DRR006521	Root Winter glycyrrhizin high producing strain	11.996
DRR006522	Root Winter glycyrrhizin high producing strain	11.753
DRR006523	Root Summer glycyrrhizin low producing strain	14.535
DRR006524	Root Summer glycyrrhizin low producing strain	14.621
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.222
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.051

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.616
SRR2868004	Drought Stress (root)	6.890
SRR2967015	Control (root)	5.388

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.278
SRR9715740	Leaf	3.838
SRR9715741	Leaf	6.987
SRR9715739	Root	1.592
SRR9715742	Root	2.242
SRR9715743	Root	2.396

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	32.902
SRR8749028	MeJA induced 9h	37.741
SRR8749029	MeJA induced 9h	38.741
SRR8749030	Uninduced	30.640
SRR8749031	Uninduced	73.424
SRR8749032	Uninduced	34.886

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.774
SRR8400027	Control - Root	4.834