Gene detail

Gene detail information of Glyur000053s00006479.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G33840.1	2.00E-152	Glycosyl hydrolase family 10 protein
NR	XP_003592519.1	0	Endo-1,4-beta-xylanase A [Medicago truncatula]
COG	YP_001869707.1	7.00E-39	glycoside hydrolase family protein [Nostoc punctiforme PCC 73102]
trEMBL	tr\|G7IEW9\|G7IEW9_MEDTR	0	Glycosyl hydrolase family 10 protein {ECO:0000313\|EMBL:AES62770.1}

Sequence

Transcript Sequence

>Glyur000053s00006479.1
TTTCGGTCACCAATTAAATTCATAAATACTCACCCTTGTTGTCAATGCCTTGAAATCAAGCAGTGCATGACAGAACCTGAGAGGCCACAATATGGAGGGGGCATCATAGTAAATCCAGAATTTGACCACAACATAGAAGGATGGACAGTATCTGGAAAGGGAGCAATTGAGGAACGAAGTCAACGAACATCAAATGAAGGCAATAGATTCATTGTTGCCCACAACAGAACACAACCATTTGATAGNTTCTCACAGAANNTCCAACTTAAGAAAGGAATGNTGTACATGTTTTCTGGTTGGTTTCAGCTCAGTGAAGGAAGTGACACTGTGTCAGTTATATTTAGAAGAAATGGAAATGAGCTGATNCGAGGTGGCCATGTGATAGCAAAGCATGGATGCTGGTCTCTGCTAAAAGGTGGCATAGTTGCAAATTTCTCAAGCCCTGCTGAGATTCTTTTTGAGAGCAACAATCCAACTGTGGAAATATGGGGTGATAGTTTCTCCCTAAAACCATTCACCATAGAGCAATGGAGATCACACCAAGAAGACAGCATTGAGAGGGTACGTAAGANCNGGGTGAGATTCCAGGTAACTNNTGTAAATGAAACAGCATTGGAAGGAGCTACGGTCTTCATCAAACAAANAAAGCCAGGCTTCCCATTTGGATGTGGAATGAACTATCATATCCTCACAAGCAGTGACTACCAGAAATGGTTTGTGCAAANATTCAAATACACAACTTTCACCAATNCAATGAAGTGGTATAGTACAGAGATAAAAAAAGGCCAAGAAAACTATACTATCCCAGATGCCATGCTGAAATTCGCCGAAGAGAATGGTATTTCTGTCAGAGGTCATAACATTTTATGGGACAGCAAAACAAAACAGCCTGGATGGGTTAAGTCCCTATCTCCTGAAGATTTAAGAGCAGCAGCAGANAAAAGAATGAAATCTGTGGTTTCAAGGTATAAAGGAAAACTGATTGCATGGGATGTGATGAATGAGAATCTCCACTTCCACTTTTTTGAGGACAAACTCGGTCAAAATGCCTCTGCAGTATATTATGCAACAGCTTACCATCTTGATCCAAAAACCAACATGTTCCTAAATGAGTTTAACACTATTGAATATAGTGGGGACAAGGTTGTAAGCCCAGCCAATTACATCAAGAAAATTAAGGAGATTCTTCAATTTCCAGGCACTGCTGAAATACCATTAGCAATAGGATTGCAAAGCCATTTTAAACCTGGCCAGCCAAATCTTGCTTACATGAGGTCAGGTCTAGACCTTCTTGGTGCAACTGGACTTCCAATATGGCTTACAGAAACGAGTGTGGATCCTCAGCCAAATCAGGCAGAGTACTTTGAAGAGGTATTAAGGGAGGGTTACTCTCATCCTGCTGTACAAGGGATTATAATGTTTGCGGGTCCAGCAGAAGCTGGTTTCAACAAGACACTCCTCGCAGATGAACATTACCAAAATACTCCAACCGGAGACGTTGTGGACAAGCTGATTCATGAGTGGGGAACTGGGCCTAAGAGAGNCATAGCAGATAGCAGAGGAATTNTAGATATTTCACTACATCATGGAGATTNTGATNTAACTGTTACACNTCCTCTAACCAACTTCTCCAAAACACTGAATATAAGTGTAAGGAAAGGATTTTCACAGGAAACCGTCCATGTGAAAATGCATGTCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00053	366932	369737	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CBM22,GH10

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0016798 hydrolase activity, acting on glycosyl bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000053s00006479.1	PF02018.12	CBM_4_9	34	120	1.10E-08
Glyur000053s00006479.1	PF00331.15	Glyco_hydro_10	216	464	2.80E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.022

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.111
DRR006520	Root Summer glycyrrhizin high producing strain	0.063
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.518
DRR006524	Root Summer glycyrrhizin low producing strain	0.524
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.107
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.116

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.267
SRR2868004	Drought Stress (root)	0.111
SRR2967015	Control (root)	0.151

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.077
SRR9715740	Leaf	0.138
SRR9715741	Leaf	0.054
SRR9715739	Root	0.026
SRR9715742	Root	0.173
SRR9715743	Root	0.013

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.043
SRR8749028	MeJA induced 9h	0.073
SRR8749029	MeJA induced 9h	0.062
SRR8749030	Uninduced	0.206
SRR8749031	Uninduced	0.175
SRR8749032	Uninduced	0.253

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.041
SRR8400027	Control - Root	0.061