Gene detail information of Glyur000053s00006478.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G33840.1 | 1.00E-159 | Glycosyl hydrolase family 10 protein |
| NR | XP_003592519.1 | 0 | Endo-1,4-beta-xylanase A [Medicago truncatula] |
| COG | YP_001869707.1 | 1.00E-40 | glycoside hydrolase family protein [Nostoc punctiforme PCC 73102] |
| trEMBL | tr|G7IEW9|G7IEW9_MEDTR | 0 | Glycosyl hydrolase family 10 protein {ECO:0000313|EMBL:AES62770.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00053 | 356317 | 359278 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CBM22,GH10 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000053s00006478.1 | PF02018.12 | CBM_4_9 | 16 | 127 | 2.40E-07 |
| Glyur000053s00006478.1 | PF00331.15 | Glyco_hydro_10 | 194 | 422 | 2.00E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.326 |
| SRR1783600 | control | 0.326 |
| SRR1783602 | moderate drought stress | 0.755 |
| SRR1811619 | moderate drought stress | 0.718 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.596 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.513 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.701 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.911 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 67.588 |
| SRR2868004 | Drought Stress (root) | 108.787 |
| SRR2967015 | Control (root) | 75.416 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.155 |
| SRR9715743 | Root | 0.565 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.001 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.021 |
| SRR8749030 | Uninduced | 0.032 |
| SRR8749031 | Uninduced | 0.003 |
| SRR8749032 | Uninduced | 0.001 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.512 |
| SRR8400027 | Control - Root | 2.623 |