Gene detail

Gene detail information of Glyur000053s00006474.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G19620.1	0	Glycosyl hydrolase family protein
NR	XP_006605998.1	0	PREDICTED: probable beta-D-xylosidase 5-like [Glycine max]
COG	YP_004464029.1	2.00E-136	glycoside hydrolase [Mahella australiensis 50-1 BON]
Swissprot	tr\|Q9LJN4\|BXL5_ARATH	0	Probable beta-D-xylosidase 5 (Precursor)
trEMBL	tr\|K7N397\|K7N397_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G27011.1}

Sequence

Transcript Sequence

>Glyur000053s00006474.1
CTTTTAGCATGAAAGTGGAAAATTGTGCACACAATCTTAGGCCCAAACTTGTGCTATATAAATTAAGCTTACCATATCTCCCAATACATATAGCAGAAAACTAGTCAAGTTTTTGGCAAACCATATATACACAATGAAAAACCAACTTTTGTTGTTGNTATCCATTATTTCCCTTTCATTTCTGATACTTCCAACTTCTAGCCAAAAACATGCATGTGACAAGGGCTCACCTAAGACCAGCAACTTCCCATTTTGCAACACTTCCCTGTCTTATGAGGCAAGGGCCAAGGACTTAGTGTCACGCCTAACACTTCAAGAAAAGGCACAACAATTGGTGAACCCTTCAGCGGGTATCTCAAGGCTTGGTGTGCCTGCCTATGAGTGGTGGTCAGAGGCACTTCATGGTGTGTCCAATTTAGGGCCAGGGACACGTTTTGACAGCAGGGTGCCAGGTGCCACTAGCTTCCCAGCAGTGATCCTATCAGCCGCGAGCCTCAATGCAACTCTGTGGCACAAGATGGGCGAGGTTGTGTCAACCGAGGCTCGAGCAATGTACAATGTGGACTTAGCTGGCTTGACATTCTGGAGTCCCAATGTGAATGTGTTCCGTGACCCGAGGTGGGGGCGTGGCCAGGAGACTCCAGGAGAGGACCCCTTGGTGGTGTCTAGATATGCTGTGAACTATGTTCTTGGCCTACAAGAAGTGGACGATGAAGCAAGTGCTAAAGCTGATAGGCTTAAGGTTTCAAGCTGTTGTAAGCATTATACTGCTTATGACCTTGACAACTGGAAAGGCGTTGATCGCTTCCACTTTGATGCAAAGGTGACAAAGCAGGACTTGGAGGACACTTATCAGCCTCCTTTTAAGAGCTGTGTGTTGGAGGGGCATGTTAGCAGTGTCATGTGCTCATATAATAGGGTGAATGGAATTCCTACATGTGCTGACCCAGACCTCCTCAAAGGGGTAATCAGAGACCAGTGGGGTCTAGACGGATATATTGTTTCAGACTGTGATTCAGTGGAGGTCTATTACGATTCAATTCATTACACAGCAACTCCTGAAGATGCAGTGGCTCTTGCACTCAAAGCAGGTTTAAACATGAACTGTGGTGACTTTCTTAAAAAANACACTGCAAATGCAGTAAACATGAAAAAAGTAGATGTAGAAACTGTAGACCAGGCCTTGGTGTACAACTACATAGTCCTAATGAGACTGGGTTTCTTTGATAACCCCAAATCACTTCCATTTGCAAACCTTGGCCCATCTGATGTATGTACTAAAGACAATCAGCAATTGGCCTTAGAAGCTGCAAAGCAAGGAATAGTTTTGCTGGAAAACAAAGGAGTTCTTCCCTTATCAAAGACCAAGGTTAAAAATTTGGCTGTGATTGGACCAAATGCCAATGCCACCACAGTTATGATTAGCAACTATGCTGGTATACCTTGCCGCTACACTAGCCCTTTACAAGGACTACAGAAGTACATTTCCTCTGTGACTTATGCACGTGGTTGTGGCAATGTTAAATGTGGTGACCAGAGCCTTTTTGCAGCAGCAACTAAGGCAGCAGCATCTGCTGATGCAGTGGTTGTTGTTGTGGGATTAGACCAATCTATAGAAGCAGAGGGCCTTGACCGAGTGAACTTGACACTGCCTGGATTTCAAGAGAAGCTTGTGAAAGATGTGGCTAGTGCTACCAAAGGAACAGTGATTTTAGTCATAATGGCAGCTGGTCCAATTGACATTTCTTTCACTATAAGTGTCAGCAACATAGGGGGGATATTGTGGGTAGGTGGTAGGTCTCCTTTTACATGGTACCCACAATCCTATGTGGATCAAGTTCCCATGACAGACATGAACATGAGAGCCAACAGCAGTAGAAATTTCCCTGGAAGAACCTACAGGTTTTACAATGGGGATTCCCTCTATGAATTTGGGCATGGATTAAGCTACTCCACATTCTCCACCTATATTGCATCTGCTCCTTCCACCATAATGATTCGTAATCAGAACACATCCATTTCTGATGTCTTCTCTTCTTCCAACTCAGCCACCCAACTTGAGTCTCTCTCTAANGGTGAAGCAATTGATATTTCCACCATAAGTTGCCAGGACTTGACATTCTTGCTTGTCATTGGTGCGAAGAACAATGGACCCTTTGATGGGTCCCACGTGGTGTTAGTGTTCTGGGAGCCAGGAATTTCAGAGCTTGTCACTGGGGCTCCAATCAAACAGCTGATAGGATTTGAAAGAGTACAAGTCAAGGTGGGGATGACAGAGTTTGTGAAAGTGAAAATCGATATATGCCAATTGCTGAGTAACGTGGATAGTGATGGCAATAGAAAGCTGGTCATTGGACAACACACTATTTTGGTTGGTTCTTNTGGTGAAAACCAGGTTAGACACAACATTGATATTACACTCTCAGCTGGGAGCTACAATGGAGAAGAATTCGTGTCTGAATGAATCTAATTAGCAAACTTTGCAAGCAGCTACAAGCCATAGCAGTAATATCCGCTAGCTAGCTAGTTACACTTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00053	343797	347259	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15920	XYL4	EC:3.2.1.37	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000053s00006474.1	PF00933.16	Glyco_hydro_3	62	350	7.60E-59
Glyur000053s00006474.1	PF01915.17	Glyco_hydro_3_C	397	552	1.10E-29
Glyur000053s00006474.1	PF14310.1	Fn3-like	679	749	5.00E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.012
SRR1783600	control	3.026
SRR1783602	moderate drought stress	1.343
SRR1811619	moderate drought stress	1.315

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.257
DRR006520	Root Summer glycyrrhizin high producing strain	10.488
DRR006521	Root Winter glycyrrhizin high producing strain	0.615
DRR006522	Root Winter glycyrrhizin high producing strain	0.642
DRR006523	Root Summer glycyrrhizin low producing strain	10.509
DRR006524	Root Summer glycyrrhizin low producing strain	10.404
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.401
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.333

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.453
SRR2868004	Drought Stress (root)	2.981
SRR2967015	Control (root)	3.420

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.192
SRR9715740	Leaf	0.088
SRR9715741	Leaf	0.404
SRR9715739	Root	0.157
SRR9715742	Root	9.082
SRR9715743	Root	7.060

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.136
SRR8749028	MeJA induced 9h	3.055
SRR8749029	MeJA induced 9h	1.992
SRR8749030	Uninduced	7.949
SRR8749031	Uninduced	9.176
SRR8749032	Uninduced	5.632

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.004
SRR8400027	Control - Root	6.619