Gene detail information of Glyur000053s00006468.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G67450.1 | 2.00E-28 | zinc-finger protein 1 |
| NR | XP_003555988.1 | 2.09E-83 | PREDICTED: zinc finger protein ZAT10-like [Glycine max] |
| Swissprot | tr|Q96289|ZAT10_ARATH | 9.00E-45 | Zinc finger protein ZAT10 |
| trEMBL | tr|I1NG21|I1NG21_SOYBN | 8.00E-84 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G26940.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00053 | 298818 | 299651 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000053s00006468.1 | PF13912.1 | zf-C2H2_6 | 124 | 149 | 1.40E-10 |
| Glyur000053s00006468.1 | PF13912.1 | zf-C2H2_6 | 180 | 203 | 9.30E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.470 |
| SRR1783600 | control | 2.415 |
| SRR1783602 | moderate drought stress | 3.169 |
| SRR1811619 | moderate drought stress | 2.851 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 188.216 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 192.045 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 85.873 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 85.877 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 430.372 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 432.368 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 104.242 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 101.083 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 37.102 |
| SRR2868004 | Drought Stress (root) | 118.137 |
| SRR2967015 | Control (root) | 269.494 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 355.936 |
| SRR9715740 | Leaf | 419.640 |
| SRR9715741 | Leaf | 374.665 |
| SRR9715739 | Root | 568.636 |
| SRR9715742 | Root | 348.314 |
| SRR9715743 | Root | 407.695 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 433.049 |
| SRR8749028 | MeJA induced 9h | 667.776 |
| SRR8749029 | MeJA induced 9h | 449.506 |
| SRR8749030 | Uninduced | 555.156 |
| SRR8749031 | Uninduced | 361.703 |
| SRR8749032 | Uninduced | 300.172 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 27.719 |
| SRR8400027 | Control - Root | 40.144 |