Gene detail information of Glyur000053s00006466 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G14820.1 | 0 | Phototropic-responsive NPH3 family protein |
| NR | XP_007143108.1 | 0 | hypothetical protein PHAVU_007G044300g [Phaseolus vulgaris] |
| Swissprot | tr|O80970|NPY2_ARATH | 0 | BTB/POZ domain-containing protein NPY2 |
| trEMBL | tr|V7BB31|V7BB31_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW15102.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00053 | 277716 | 279909 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000053s00006466.1 | PF03000.9 | NPH3 | 144 | 398 | 1.20E-89 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.061 |
| SRR1783600 | control | 3.013 |
| SRR1783602 | moderate drought stress | 2.746 |
| SRR1811619 | moderate drought stress | 2.726 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.786 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.558 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.113 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.055 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.410 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.989 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.857 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.806 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.156 |
| SRR2868004 | Drought Stress (root) | 7.723 |
| SRR2967015 | Control (root) | 9.365 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.345 |
| SRR9715740 | Leaf | 1.764 |
| SRR9715741 | Leaf | 1.249 |
| SRR9715739 | Root | 0.712 |
| SRR9715742 | Root | 2.706 |
| SRR9715743 | Root | 2.681 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.472 |
| SRR8749028 | MeJA induced 9h | 4.850 |
| SRR8749029 | MeJA induced 9h | 4.042 |
| SRR8749030 | Uninduced | 2.567 |
| SRR8749031 | Uninduced | 1.491 |
| SRR8749032 | Uninduced | 1.452 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.801 |
| SRR8400027 | Control - Root | 7.851 |