Gene detail information of Glyur000053s00006465 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G49940.1 | 2.00E-43 | LOB domain-containing protein 38 |
| NR | AFK46936.1 | 2.55E-76 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9SN23|LBD38_ARATH | 4.00E-53 | LOB domain-containing protein 38 |
| trEMBL | tr|I3T344|I3T344_LOTJA | 1.00E-76 | Uncharacterized protein {ECO:0000313|EMBL:AFK46936.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00053 | 272691 | 274205 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LOB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000053s00006465.1 | PF03195.9 | DUF260 | 2 | 99 | 2.10E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.384 |
| SRR1783600 | control | 2.394 |
| SRR1783602 | moderate drought stress | 3.700 |
| SRR1811619 | moderate drought stress | 3.416 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.635 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.449 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.234 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.055 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.603 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.048 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.659 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.751 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.256 |
| SRR2868004 | Drought Stress (root) | 19.483 |
| SRR2967015 | Control (root) | 35.961 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.539 |
| SRR9715740 | Leaf | 3.344 |
| SRR9715741 | Leaf | 3.452 |
| SRR9715739 | Root | 3.903 |
| SRR9715742 | Root | 3.835 |
| SRR9715743 | Root | 5.611 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.198 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.120 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.657 |
| SRR8400027 | Control - Root | 1.092 |