Gene detail

Gene detail information of Glyur000053s00006456

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G43740.1	6.00E-68	Leucine-rich repeat (LRR) family protein
NR	AFK44866.1	2.00E-137	unknown [Lotus japonicus]
COG	YP_001192956.1	2.00E-21	two component regulator [Flavobacterium johnsoniae UW101]
Swissprot	tr\|Q94AG2\|SERK1_ARATH	1.00E-70	Somatic embryogenesis receptor kinase 1 (Precursor)
trEMBL	tr\|I3SX74\|I3SX74_LOTJA	7.00E-138	Uncharacterized protein {ECO:0000313\|EMBL:AFK44866.1}

Sequence

Transcript Sequence

>Glyur000053s00006456.1
GAAAACAGAAATCGTCCACGAGTCTAAATCCAGACACTTTCCAAAGTCCTTGTTGTCACCCGTTATTCAAGTCTGCACTGCAATAATCAGTCCTTGTTCTCAGCCAGGGATGGATGGGGTGTGTGCCCCACATAAACGCGCCAGAAGACTCTCTTTCTGACTCCACGGCACTCACAGCCACTGCGTGACCTTTTCCACTCATCCTTCCAATTTGAAGTTTTAACTACAATTGTTTGTTTGACCAGCAATCCCTCTTCTTTTCCATCCAACCCCACTACTGCCATTTGGTCCACCCCCACCTCTCTTCTCATTCTTCTCTCTTCTCTCTTAACTTTTCTTCCCAAGTTCTGCCTTTCCTCTTTGTTCTCTCTCTCTCTCTCTTTCTTCTCATACTTTACACCAGAAGATTTGCTCACAAAGAAAGGAGGAAAAATGGCACCTTTCATTTCCCTCTCTGTATTATTTATCCTTCTCCAGTATCCCCTCCAATCCCTCTCGACCAACTCTGAAGGGAATGCTCTGCATGCTTTGAGGAGCAGGCTTTCTGACCCCAACAACGTGTTGCAGAGTTGGGACCCAACTCTGGTTAATCCATGTACTTGGTTTCACGTTACCTGTGACTCCAACAACCATGTGATTCGCCTAGACTTGGGCAATTCTAACGTTTCTGGAACTATGGGCCCAGAACTTGGCCAGCTACACCATCTGCAGTACCTGGAGCTCTACGGGAATGACTTAAGAGGAAAGATCCCTGAGGAACTTGGAAACTTAAAAGCACTTATTAGCATGGATTTGTATAGTAACAAGTTTGAGGGGAAAATCCCAAAGTCATTTGGCAAGTTGAAGTCACTAAAATTCCTGCGGCTAAACAACAACGAGTTGACAGGATCTATCCCAAGAGAACTCACTCGTCTCACTAATCTCAAAATCTTGGATGTTTCTAATAATGACCTCTGTGGAACAATACCAGTAGATGGCAACTTTGGATCCTTCCCAATGGAAAGTTTTGAAAACAACAGACTCAGTGGTCCCGAGCTGAAAGGACTCGTTCCGTACGATTTTGGATGCTGAAGGAAGATAAGAATTCGCATATATTATCATCTTAAGTATAGATGGCAATGAAGATGCTTGGTTTATCTTGGTAGTATCTTATTCGTATCAGAAAGGGTGGTGTTAATTGCACATCAATATTTCTTCACCATTTTTACACTTTTATTGCTTAGGAAAAATAAAAATTGGGGAGAATGAATTGGAATCCATGTTTTTCTTGTTTTATTATAAAAAAGGAAGTGGCGTAAGATTGGTGTAAACAGTAAAAGAGACCCTTGTATGTAAACAACGTTATTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00053	230074	233027	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000053s00006456.1	PF08263.7	LRRNT_2	24	63	6.60E-11
Glyur000053s00006456.1	PF00560.28	LRR_1	91	113	0.068
Glyur000053s00006456.1	PF12799.2	LRR_4	138	175	4.80E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	37.145
SRR1783600	control	37.106
SRR1783602	moderate drought stress	31.719
SRR1811619	moderate drought stress	31.602

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.400
DRR006520	Root Summer glycyrrhizin high producing strain	30.441
DRR006521	Root Winter glycyrrhizin high producing strain	83.195
DRR006522	Root Winter glycyrrhizin high producing strain	81.314
DRR006523	Root Summer glycyrrhizin low producing strain	65.162
DRR006524	Root Summer glycyrrhizin low producing strain	65.822
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.702
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.681

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	59.604
SRR2868004	Drought Stress (root)	86.972
SRR2967015	Control (root)	67.380

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	173.025
SRR9715740	Leaf	142.412
SRR9715741	Leaf	245.286
SRR9715739	Root	25.978
SRR9715742	Root	81.837
SRR9715743	Root	63.597

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	80.865
SRR8749028	MeJA induced 9h	131.264
SRR8749029	MeJA induced 9h	108.070
SRR8749030	Uninduced	181.133
SRR8749031	Uninduced	174.317
SRR8749032	Uninduced	109.784

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	70.953
SRR8400027	Control - Root	63.663