Gene detail information of Glyur000053s00006455 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G23090.1 | 4.00E-25 | Uncharacterised protein family SERF |
| NR | KHG16029.1 | 1.78E-35 | hypothetical protein F383_22011 [Gossypium arboreum] |
| Swissprot | tr|O64818|Y2309_ARATH | 4.00E-32 | Uncharacterized protein At2g23090 |
| trEMBL | tr|I3SI56|I3SI56_LOTJA | 2.00E-34 | Uncharacterized protein {ECO:0000313|EMBL:AFK39948.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00053 | 227875 | 228622 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000053s00006455.1 | PF12907.2 | zf-met2 | 66 | 95 | 1.40E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.397 |
| SRR1783600 | control | 1.932 |
| SRR1783602 | moderate drought stress | 10.041 |
| SRR1811619 | moderate drought stress | 9.409 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.821 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.573 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.352 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.460 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.611 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.021 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.078 |
| SRR2868004 | Drought Stress (root) | 0.236 |
| SRR2967015 | Control (root) | 0.092 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.148 |
| SRR9715740 | Leaf | 0.691 |
| SRR9715741 | Leaf | 1.546 |
| SRR9715739 | Root | 1.200 |
| SRR9715742 | Root | 0.760 |
| SRR9715743 | Root | 1.161 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.587 |
| SRR8749028 | MeJA induced 9h | 0.735 |
| SRR8749029 | MeJA induced 9h | 1.466 |
| SRR8749030 | Uninduced | 0.897 |
| SRR8749031 | Uninduced | 1.246 |
| SRR8749032 | Uninduced | 1.170 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.177 |
| SRR8400027 | Control - Root | 1.196 |