Gene detail information of Glyur000053s00006448 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G33920.1 | 5.00E-154 | Protein phosphatase 2C family protein |
| NR | XP_007143091.1 | 0 | hypothetical protein PHAVU_007G042800g [Phaseolus vulgaris] |
| Swissprot | tr|O81760|P2C63_ARATH | 0 | Probable protein phosphatase 2C 63 |
| trEMBL | tr|V7BF40|V7BF40_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW15086.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00053 | 201518 | 204532 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000053s00006448.1 | PF00481.16 | PP2C | 61 | 305 | 1.50E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 28.659 |
| SRR1783600 | control | 28.840 |
| SRR1783602 | moderate drought stress | 28.252 |
| SRR1811619 | moderate drought stress | 27.787 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 53.234 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 52.563 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 21.911 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 21.028 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 104.882 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 105.078 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 34.010 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 33.861 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 30.333 |
| SRR2868004 | Drought Stress (root) | 39.917 |
| SRR2967015 | Control (root) | 42.788 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 101.049 |
| SRR9715740 | Leaf | 87.990 |
| SRR9715741 | Leaf | 136.850 |
| SRR9715739 | Root | 45.355 |
| SRR9715742 | Root | 72.839 |
| SRR9715743 | Root | 68.250 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 85.320 |
| SRR8749028 | MeJA induced 9h | 109.919 |
| SRR8749029 | MeJA induced 9h | 120.858 |
| SRR8749030 | Uninduced | 154.934 |
| SRR8749031 | Uninduced | 164.042 |
| SRR8749032 | Uninduced | 88.424 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 30.622 |
| SRR8400027 | Control - Root | 42.325 |