Gene detail

Gene detail information of Glyur000053s00006445.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G34280.1	0	transducin family protein / WD-40 repeat family protein
NR	XP_004496902.1	0	PREDICTED: uncharacterized protein LOC101498494 isoform X1 [Cicer arietinum]
COG	YP_004050921.1	5.00E-10	wd40 repeat, subgroup [Calditerrivibrio nitroreducens DSM 19672]
Swissprot	tr\|O22467\|MSI1_ARATH	1.00E-06	Histone-binding protein MSI1
trEMBL	tr\|V7BB13\|V7BB13_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW15082.1}

Sequence

Transcript Sequence

>Glyur000053s00006445.1
GAACCCGTGGTTCGNATTGTGACATACTCTTTTCTTATCCCTTTTTCCTTTGTTGATTTATTTACGTTTTCCGCTTTGGTTTGTGAAAGCGTTGATCAGAGAGTTTTTGCAATCACTNTGTGCGAAGCTCGATCGCCATGGCCGTCGACATCCAAACCTTGGAAGACAGGTATATTGATTGTTGCAGGAGACATGGTGTTTTGCCTAACACTACNATTTTGTCAAGCTTTTTCAAGGCTGAGGTCAAAAAATCCCGCCAAGAGCTGTGCCTCCTGGACATTTTAATTGATGACCTCAAGGATATTGATTTTGCTCCCCTTCTTGACGTATGCATGAACCTTGATACTTCTGAAATAGAAGCTGTTGATGTACGTAATGAATCATCATGTGTATTAAATGGAGAATATGCATTATCATTGATGCGTGCTATTAATCAAAAGCTTCGAGTAGTCGAACTACAGGATGTGTCATTTGGAAAAGACTTCTTACGGGATATTTCACAAAGAGGCTTGGCATGCCAAGTTTTGACATTGAGGGCTTCGCGTTTCCGGAAGCTGAACTTGATGGGGGAGTTCATGCACATGCACACACTTAATCTTGATTTCAGTTCTTCCCTTACCAGTTTCCAAGAAGACTGTTTTAATTGCATGCCAAATCTAATGTGTCTATCAATGTGTGATACACGGATTACAAATCTTTGGACAACTGTTGCAGCTCTCTCTAAGCTTCCTTCTTTGGTTGAACTAAGGTTTCAATATTGGCAGTATTGCAATGATGCTGGAACATCTTTTAACTCATCCAGTGGGAAGTCAGATGGCACTGCTGATTTTAGGCTACTTGATAGAGTTCCTTTTATTGGTGAATCCTGCACTGATACAAGGGAACTGACATATTCCACTTTTAGTGCCGAGGATCCACTCAGAAATTTTTATTCCTTTGATGAAGAAGTTATAAGTCATGATGTTCAAAGCATGGTTGAGGATTCATCAGATGACAGTGAAATCGACTTTACAAGTCATCATCATAGAAACTGGTTGTCAGATGTTTTTCCTAGGTGGAATTTACAAGTTCCTCTTCAGAGTGAGAATGAAGAAGAAGAGTCGTCTCGGGGTTCCTTTACAGAGCATGTTGTTGATGTTTCTATGAAGTATATGTCTTGTCATGCATCACCAATATGTCATGAGAAGCATTACAGAGAATTCATGATAGCTTCATTACCAAATCTGAAAAGTTTAGATAATTTGCCCATCAGAAAGATTGACAAGGATAGGGCTACAGGAGAACTTTCTCAATACTTTGAATATCTTCCATACAGATGGAAGAACAAAGAGAGTGTTGTAAATATCTTACAAAAGCGAGAAATAAAATCAGGTCACATTAAGGTGCGATCTTCTAAGCGCGGCCCATCATATCCTTCTGGAACGTCCCAATATTTTTATACTAGGTCTCTTTCTGCTGCTAAATTGGGGTCTTCAACTTGGCCTTTGTTGCACCCCCTTTCTCTATTAGGATGTGAATTGGATCAGGGCTTTCGTCCAAGGCAGTTTGAGTATCACCCATCTGACTCCAGCTTGATGGTCTTTGGTACTTTAGATGGTGAAGTAGTTGTCATCAATCATGAGAATGAACACATTGTGAGTTATATCCCATCACTTGGAGCAATGAATAGTGTCTTGGGTCTTTGTTGGCTCAAGAAGTATCCCTCTAAGCTTATAGCAGGTTCAGACAATGGTTCCCTGAAATTGTATGACATCAACCACACACCAAGAAAAGTTACTGGCATATATGGGAATTCTGGTTGTGTTACCTTTGACGAATTTGACCAGTTGACATCTGTACATGTTAACTCTTCAGATGAACTATTTCTTGCAAGTGGTTACTCAAGAAATGTTGCTTTGTATGACATCAACAGTGGAAAACGCTTACAAGTGTTCACAGATATGCATCGTGGTCATATTAATGTAGTCAAGTTTGCAAATCACTCCCCNTCAATTTTTGCTACTTCATCATTTGATCAGGATGTCAAGATGTGGGACTTGAGACAGAAACCAATACACCCTTGCTTCACTGCTTCAAGCTCTAGAGGAAATGTGATGGTTTGCTTTTCTCCAGATGACCAATATATTCTTGCATCAGCAGTTGACAATGAGGTTAGACAATTTCTAGCTGTTGATGGTAGGCTTCACTTAGTTTTTGATATAGCTCCCACTGAAAGTTCTCAAAATTACACCCGTTCTTATTACATGAATGGGAGGGACTACATTATAAGCGGGAGTTGTGATGAACACATTGTCCGTATTTGCTGTGCTCAAACGGGGAGGCGCCTGAGAGATATTTCCCTTGAGGGAAGAAGCTTAGGAAGTTCCATGTTTGTTCAATCTTTGAGGGGCGATCCTTTCAGGGCTTTCAATTTGAGCGTGTTAGCAGCCTACATGCGGCCAGGCTCCAAATCTGAAATTGTCAAGGTCAACTTACTAGCATCTAGTGGCCATGCTAAGGATGATTCTGTTGACCAGCGCCTTTGCCCGTCCCACAGTATGGGAGCTTGATGTACGATTTTGTATGTATTATATATGTAGAGAGAGGATTTTCAATCGGTGTTTCGTAGAATAATAATTATAATTATAATTCTAGTTAAAAGTGAGTTCAGCTGAGCTTTGCCTACATGTAATGTAAATCCAACGAGTGTAAATAAAAAGTATATGTAATGTGACTCAAAAGTTGCAGTGATCAGATACCTGTGTTTGTAAATGCTACTTCTGTATGGTAAAATGACAAAGCTGAACACTTGCTCATGTGGTTTTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00053	161892	169246	-

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000053s00006445.1	PF00400.27	WD40	601	633	0.0018

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.130
SRR1783600	control	11.320
SRR1783602	moderate drought stress	13.221
SRR1811619	moderate drought stress	13.508

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.062
DRR006520	Root Summer glycyrrhizin high producing strain	10.943
DRR006521	Root Winter glycyrrhizin high producing strain	10.417
DRR006522	Root Winter glycyrrhizin high producing strain	10.103
DRR006523	Root Summer glycyrrhizin low producing strain	8.179
DRR006524	Root Summer glycyrrhizin low producing strain	8.198
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.716
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.902

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.791
SRR2868004	Drought Stress (root)	9.968
SRR2967015	Control (root)	11.849

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.503
SRR9715740	Leaf	14.101
SRR9715741	Leaf	9.271
SRR9715739	Root	1.926
SRR9715742	Root	6.884
SRR9715743	Root	5.291

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.303
SRR8749028	MeJA induced 9h	14.850
SRR8749029	MeJA induced 9h	9.947
SRR8749030	Uninduced	7.959
SRR8749031	Uninduced	6.549
SRR8749032	Uninduced	5.768

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.497
SRR8400027	Control - Root	16.853