Gene detail information of Glyur000053s00006444 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G14900.1 | 3.00E-22 | Gibberellin-regulated family protein |
| NR | KHN42338.1 | 2.88E-46 | Snakin-1 [Glycine soja] |
| Swissprot | tr|Q948Z4|SNAK1_SOLTU | 2.00E-29 | Snakin-1 (Precursor) |
| trEMBL | tr|V7BBX2|V7BBX2_PHAVU | 2.00E-40 | Uncharacterized protein {ECO:0000313|EMBL:ESW15080.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00053 | 159092 | 160133 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000053s00006444.1 | PF02704.9 | GASA | 32 | 90 | 7.60E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 193.173 |
| SRR1783600 | control | 194.018 |
| SRR1783602 | moderate drought stress | 49.707 |
| SRR1811619 | moderate drought stress | 49.219 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 34.562 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 33.527 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.637 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.619 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.351 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.911 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.840 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.847 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 86.478 |
| SRR2868004 | Drought Stress (root) | 46.621 |
| SRR2967015 | Control (root) | 35.956 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.075 |
| SRR9715740 | Leaf | 2.420 |
| SRR9715741 | Leaf | 9.935 |
| SRR9715739 | Root | 20.897 |
| SRR9715742 | Root | 63.357 |
| SRR9715743 | Root | 47.149 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.133 |
| SRR8749028 | MeJA induced 9h | 2.464 |
| SRR8749029 | MeJA induced 9h | 6.819 |
| SRR8749030 | Uninduced | 2.630 |
| SRR8749031 | Uninduced | 0.996 |
| SRR8749032 | Uninduced | 1.303 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.267 |
| SRR8400027 | Control - Root | 30.141 |