Gene detail information of Glyur000053s00006441 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G56510.1 | 1.00E-40 | pumilio 12 |
| NR | XP_004496035.1 | 6.34E-99 | PREDICTED: pumilio homolog 11-like [Cicer arietinum] |
| Swissprot | tr|Q9LVC3|PUM12_ARATH | 1.00E-47 | Pumilio homolog 12 |
| trEMBL | tr|A0A072W184|A0A072W184_MEDTR | 3.00E-99 | Pumilio-family RNA-binding repeatprotein {ECO:0000313|EMBL:KEH44045.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00053 | 151005 | 154767 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000053s00006441.1 | PF00806.14 | PUF | 133 | 156 | 2.60E-07 |
| Glyur000053s00006441.1 | PF00806.14 | PUF | 287 | 320 | 7.10E-05 |
| Glyur000053s00006441.1 | PF00806.14 | PUF | 323 | 350 | 0.00029 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.954 |
| SRR1783600 | control | 0.968 |
| SRR1783602 | moderate drought stress | 0.989 |
| SRR1811619 | moderate drought stress | 0.972 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.092 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.091 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.063 |
| SRR2868004 | Drought Stress (root) | 5.668 |
| SRR2967015 | Control (root) | 2.924 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.193 |
| SRR9715740 | Leaf | 0.190 |
| SRR9715741 | Leaf | 0.112 |
| SRR9715739 | Root | 0.130 |
| SRR9715742 | Root | 4.804 |
| SRR9715743 | Root | 4.373 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.277 |
| SRR8749028 | MeJA induced 9h | 0.025 |
| SRR8749029 | MeJA induced 9h | 0.118 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.581 |
| SRR8400027 | Control - Root | 23.537 |