Gene detail

Gene detail information of Glyur000053s00006438.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G19510.1	1.00E-85	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
NR	XP_004496910.1	0	PREDICTED: pathogenesis-related homeodomain protein-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q04996\|HAT31_ARATH	1.00E-126	Homeobox protein HAT3.1
trEMBL	tr\|K7LLH5\|K7LLH5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G40641.1}

Sequence

Transcript Sequence

>Glyur000053s00006438.1
ATGGGAACTGAACAATGCGATTTGTCTGGAAAAACACCTCAGACGGGTTCTGAATGTTTAGACAGCGAGCAAAGGGTGCTTGGTACTGTGTCAATCAATTCTGTTACTGATGAAAAATCAAATCAAGTTTCTGCTAATGTGACTGAGAATTCTGTTATTCAACTGCCTGAACCACCTTATCATTACTTAGAAAATAATTGTCAGACTGTAGATGGTTCTTGCCTTCAACAAAGTACCTTTAAACAAGTCCCTGATATTTTATCTGATGATAAATCAGAAAACAAATGTCCTCAAAATCTTCAAAATGAACCAGGAGAAATAAGTGATGCAGTAAATGGCCTTGTTGCTGAAGACCAAATGCAATCTGTTCCTGCCCAAGTGAACATGAGTTCTGTGAATGAGCTATTGGATCCGCCTTCTGCTCAAGTCCCTGTTAATTTATCTGATGACGAATCAGAAAACAAATGTCCTCAAAATCTTCAAAATGAACCTGGAGAAATAAGTGATGCAGTAAATGGCCTTGTTGCTGAAGACCAAATGCAATCTGTTCCTGCCCAAGTGAACATGAGTTCTGTGAATGAGCTATTGGATCCGCCTTCTGCTCAAGTCCCTGTTAATTTATCTGATGACGAATCAGAAAACAAATGTCCTCAAAATCTTCAAAATGAACCTGGAGAAATAAGTGATGCAGTAAATGGCCTTGTTGCTGAAGACCAAATGCAATCAGTTCCTGCTCATTTGAACATGAGTTCTGTGAATGAGCTATTGGATCTGCCTTCTGCCCAAGACCCTGTTAATTCATCTGATGACAAATCAGAAAACAAATGTCCTCAAAATCTTCAAAATGAACCTGGAGAAAGAGGTGATGCAGTAACTGGACTTGTTGCTGAAGACGGAATACTATCCGTTCCTGCTCAAGTGAACATGAGTTCTGAGAATGAACTATTGAATCCGCCTTCTGCTCAAGCCCCTGTTAATTTATCTGATGATAANTCAGAAAACCAATGTCCTCTAAGTCTTCAAAATGAACCTGGAGAAAGAGGTGATGTAGTAACTGAANTTCTTGTTGAAGACCAAATGCAATGCGTTCCTGCTCAAGTGAACATGAGTACTGAGAATGAACTATTGGATCTGCCTTCTGCTCAAGTCCCTGTTAATTTATCTGATGATAAATCAGAAATCAAATGTCCTCAAATTCTTCAAAATGAACGTGGAGAAATAAGTGATGCAGTAACTGACCTTGTTGTTGAAGACCAAATGCAATCTGTTCCTACTCAAGTGAACATGAGTTCGGCAAATGAACTATTGGATCCTCCTTCTGCTCAAGTCCCTGTTAATTTGGCTGATGATAAATCTNAAATCAAATGTCCTCAAAATCTTCAAAATGAGCCTGGANAAATAAGTGATTCTGTAACTGGCCTTGTTGTTGAAGACCATATGCAATCCGTTCCTGCTCAAGTGAACATGAGTGCTGCAAATGAACTATTGGATCCACCTTCTGCTCAAGTCCCTGTTAATTTATCTGATGATAAATCTGAAAACAAATGTCCTCAAGATCTTCAAAATGAGCCTGGAGAAATAAGTGATGCAGTAACTGACCTTCTTGTTGAAGACCAAATGCAATCCGTTCCTGCTCAAGTGTGCNTGAGTTCTGCGAATGAGCTATTGGATCCACATTCTGGAGATGTTGTGAAAAATATTAGTTCCAATTGTTCAGAAAGAAAGCCTAAAAACTCAGCTCATTTGCGATTGAGGCGCACGGGTAAAAGTAACTCAAAATTATTGAAGAAGAAATATATGTTAAGGTCATTGGGAAGCAGCGACAGAGCTTTGCGGTCAAGGACAAGAGATAAACCTAAATCTCCTGAACCACAGAGTAATGTTGCTGATGTTAATAATGATGAAATGAAGAGGAAAAAAGGGAGGAAGAAGAAAAAGAGAAGAGGGGAGGGAGTTAATGATCAATTTTCTAGAATCAGATCTCATTTAAGATATTTATTGAACCGGGTAAGCTACGAGCAAAGCTTGATTGATGCTTATTCTGGTGAGGGCTGGAAAGGATACAGTATGGAAAAATTAAAGCCTGAAAAGGAAATTGAACGGGCTAAGGCTGAAATTCTTCGGCGTAAATTGAAAATTAGGGATCTATTTCGAAATTTGGATTCATTATGTGCTGAAGGAAAGCTTCCAGAATCTTTGTTTGATTCGGAGGGAGAGATTGACAGTGAGGATATATTTTGTGCAAAGTGCCAGTCAAAAGAGTTGAGCACTGATAATGATATAATTCTCTGTGATGGTGCTTGTGACCGTGGATTTCACCAGCTNTGTTTGGATCCTCCATTGTTAACTGAAGACATTCCACCTGGNGATGAGGGTTGGTTATGCCCAGGATGTGATTGCAAAGATGATTGCATCGAACTTGTTAATGACTCCTTAGGAACAAATCTATCTCTTAGTGACACCTGGAAGAGGGTTTTCCCTGAAGCAGCTACAGCTGCTGGAAATAATATGGATCCCAACTTGGGACTTCCTTCTGATGATTCTGATGACGATGATTACAATCCTAATGGCCCAGAGGATGTGGAGGTTGAAGGAGGTGAGTCAAGTTCTGATGAATCTGAGTATGCTTCTGCTTCTGAGAAATTGGAGGATTCACGCCATGAGGATCAATACATGGGCCTTCCATCTGAAGATTCAGAGGATGATGATTATGATCCTAATGCTCGAGATGTTGACAGTAAAGTCACTGAAGAAAGTTCAAGCTCTGATTTCACATCCGATTCTGAAGATCTAGCTGCTGCAATTGGGGANAACATGTCCACTGGACAGGATGGTGATCTCATATCTGCATCATTGGATAATGTTAAGAACCTCAAAGGTTCTAGCAGACAAAAGGGTAAAGTTGGTAATAAGCCATCTATTGCTGATGAACTGTCATCTTTACTAAAGCCAGATCCTGGCCAAGAGGATTTCACTCCTGTTTCTAGGAAAAGGAATGTAGAAAGGTTGGACTACAAAAGGCTGTATGATGAGACATATCAAAGTGATACTAGTGAGGATGAAGAATGGACCGATAGTGCTACTCCAAGTAGAAAAAAGAAACACACCGGCAAAATGACTCCAGTGTCACCAAATGGAAATTCCTCAAATAATTCTANATATACTCCTAGGAGGAACACTGATCAGAATACAAATAATTCACCCACCAAATCACTCGAAGGACGTCAGGAGTCTGGTTCCAGGGATAAAAAACCTGGATCTTCCACACACAAAAAACTTGGAGAAGCAGTAGTTCAGAGACTTCACAAATCTTTTAAAGAAAATCAATATCCAGATCGAACCACAAAAGAAAGCTTGGCACAAGAACTCGGACTCACTTTTCGGCAGGTTGACAAATGGTTTGGCAATACTCGGTGGAGCTTCCGGCATTCATCACATAAGGAAACCAGTCCAGGTAGAAATGCTTTGCAGCAGGCCACTGATAGCAGAGCTGAAAATAATAATGAGGAGAGGGAATGTAAATTAGTGTCGCAGGAGGTCGGTGGAGAGAACTCAAAAGCAACAAACTCTAGAAAAAGGAAGCATTTGTCCGAGCCCGAGTCATCCGAAGCACGGCCGGACATCGATGGCTCAGCAGTAATGTCTCCTGCTGGCTCGCCAAGTGCTGGTGAAATGCAAACAGGCAATAAAATGAAGACAAGGAAAAGGAAATGATACTTTATTGAGAAGTCAAGCTTAACCTTTTCCTAAGGCACCAAAATTATACTATCCATCCTTTTGTGAGATTGAGATCCTGTGAGATGATCAGCTCGGATCTCCAAGGATTTGTTTCCATTCAGGAAGGTAATCTCTAATTTGTGTCATTGTTTGTAATTTTAAAAAAATAGCTTTCTGTGTATTCATCTCATGTGAGTTAGTTTTAGCGTTGCCGCTCTTGCAAACAAGAAAAATAGTTATCAGTTACTAGTTTTAGATTATTTTTTTGGGTCTTTTACAGAGACCCCTTTCCTTCCTATCAAATGATGTTTTTCCTCCTTTTATGAGGGTGGTTACTAACAATACAAAAAGCAAAAAAAAAAAATGCAAATAGGGGAACAATTCATTTGGTACCTCAGGATTCAATGTCATAATGTATTAACTATGTGTTTGATCTGCGTCACAGCGCTCATCTTGAGAAACTGAATGGAATAGGAGTATCATATATTCCTAAGCGAGTCTTAATTTCCACTCGTTTAGGATTTCATAACTTCTATGAT

Protein Sequence

>Glyur000053s00006438.1
MGTEQCDLSGKTPQTGSECLDSEQRVLGTVSINSVTDEKSNQVSANVTENSVIQLPEPPYHYLENNCQTVDGSCLQQSTFKQVPDILSDDKSENKCPQNLQNEPGEISDAVNGLVAEDQMQSVPAQVNMSSVNELLDPPSAQVPVNLSDDESENKCPQNLQNEPGEISDAVNGLVAEDQMQSVPAQVNMSSVNELLDPPSAQVPVNLSDDESENKCPQNLQNEPGEISDAVNGLVAEDQMQSVPAHLNMSSVNELLDLPSAQDPVNSSDDKSENKCPQNLQNEPGERGDAVTGLVAEDGILSVPAQVNMSSENELLNPPSAQAPVNLSDDXSENQCPLSLQNEPGERGDVVTEXLVEDQMQCVPAQVNMSTENELLDLPSAQVPVNLSDDKSEIKCPQILQNERGEISDAVTDLVVEDQMQSVPTQVNMSSANELLDPPSAQVPVNLADDKSXIKCPQNLQNEPGXISDSVTGLVVEDHMQSVPAQVNMSAANELLDPPSAQVPVNLSDDKSENKCPQDLQNEPGEISDAVTDLLVEDQMQSVPAQVCXSSANELLDPHSGDVVKNISSNCSERKPKNSAHLRLRRTGKSNSKLLKKKYMLRSLGSSDRALRSRTRDKPKSPEPQSNVADVNNDEMKRKKGRKKKKRRGEGVNDQFSRIRSHLRYLLNRVSYEQSLIDAYSGEGWKGYSMEKLKPEKEIERAKAEILRRKLKIRDLFRNLDSLCAEGKLPESLFDSEGEIDSEDIFCAKCQSKELSTDNDIILCDGACDRGFHQLCLDPPLLTEDIPPGDEGWLCPGCDCKDDCIELVNDSLGTNLSLSDTWKRVFPEAATAAGNNMDPNLGLPSDDSDDDDYNPNGPEDVEVEGGESSSDESEYASASEKLEDSRHEDQYMGLPSEDSEDDDYDPNARDVDSKVTEESSSSDFTSDSEDLAAAIGXNMSTGQDGDLISASLDNVKNLKGSSRQKGKVGNKPSIADELSSLLKPDPGQEDFTPVSRKRNVERLDYKRLYDETYQSDTSEDEEWTDSATPSRKKKHTGKMTPVSPNGNSSNNSXYTPRRNTDQNTNNSPTKSLEGRQESGSRDKKPGSSTHKKLGEAVVQRLHKSFKENQYPDRTTKESLAQELGLTFRQVDKWFGNTRWSFRHSSHKETSPGRNALQQATDSRAENNNEERECKLVSQEVGGENSKATNSRKRKHLSEPESSEARPDIDGSAVMSPAGSPSAGEMQTGNKMKTRKRK

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00053	132044	139574	-

Gene family

Gene family	subfamily
Transcription Factors Family	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000053s00006438.1	PF00628.24	PHD	746	801	6.90E-10
Glyur000053s00006438.1	PF00046.24	Homeobox	1097	1142	4.60E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.760
SRR1783600	control	5.750
SRR1783602	moderate drought stress	7.678
SRR1811619	moderate drought stress	7.703

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.744
DRR006520	Root Summer glycyrrhizin high producing strain	6.576
DRR006521	Root Winter glycyrrhizin high producing strain	14.134
DRR006522	Root Winter glycyrrhizin high producing strain	13.688
DRR006523	Root Summer glycyrrhizin low producing strain	8.512
DRR006524	Root Summer glycyrrhizin low producing strain	8.544
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.378
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.295

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.258
SRR2868004	Drought Stress (root)	10.228
SRR2967015	Control (root)	10.915

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.310
SRR9715740	Leaf	8.742
SRR9715741	Leaf	7.476
SRR9715739	Root	0.644
SRR9715742	Root	5.245
SRR9715743	Root	5.123

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.158
SRR8749028	MeJA induced 9h	11.478
SRR8749029	MeJA induced 9h	10.999
SRR8749030	Uninduced	10.978
SRR8749031	Uninduced	11.183
SRR8749032	Uninduced	7.794

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.622
SRR8400027	Control - Root	9.717