Gene detail information of Glyur000053s00006428 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G15220.1 | 1.00E-70 | Plant basic secretory protein (BSP) family protein |
| NR | AFK40641.1 | 1.02E-138 | unknown [Medicago truncatula] |
| Swissprot | tr|C0HJG8|BSP_BOSSE | 1.00E-12 | Basic secretory protease {ECO:0000303|PubMed:22773449} (Fragments) |
| trEMBL | tr|I3SK49|I3SK49_MEDTR | 4.00E-139 | Uncharacterized protein {ECO:0000313|EMBL:AFK40641.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00053 | 87613 | 88290 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000053s00006428.1 | PF04450.7 | BSP | 20 | 217 | 1.20E-82 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.724 |
| SRR1783600 | control | 4.229 |
| SRR1783602 | moderate drought stress | 1.273 |
| SRR1811619 | moderate drought stress | 1.339 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.862 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.840 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.514 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.564 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 215.603 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 215.062 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.064 |
| SRR2868004 | Drought Stress (root) | 17.758 |
| SRR2967015 | Control (root) | 15.518 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 138.043 |
| SRR9715740 | Leaf | 91.348 |
| SRR9715741 | Leaf | 108.466 |
| SRR9715739 | Root | 6.387 |
| SRR9715742 | Root | 40.239 |
| SRR9715743 | Root | 33.612 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.042 |
| SRR8749028 | MeJA induced 9h | 42.675 |
| SRR8749029 | MeJA induced 9h | 26.721 |
| SRR8749030 | Uninduced | 47.263 |
| SRR8749031 | Uninduced | 16.200 |
| SRR8749032 | Uninduced | 10.365 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.772 |
| SRR8400027 | Control - Root | 11.974 |