Gene detail

Gene detail information of Glyur000053s00006426.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G15230.1	2.00E-149	lipase 1
NR	XP_004496935.1	0	PREDICTED: triacylglycerol lipase 1-like [Cicer arietinum]
COG	NP_250462.1	2.00E-07	EstX protein [Pseudomonas aeruginosa PAO1]
Swissprot	tr\|Q71DJ5\|LIP1_ARATH	0	Triacylglycerol lipase 1 (Precursor)
trEMBL	tr\|V7BEZ8\|V7BEZ8_PHAVU	0	Lipase {ECO:0000256\|PIRNR:PIRNR000862}

Sequence

Transcript Sequence

>Glyur000053s00006426.1
CTAACGGTAAACAGTTGTGTGGTTCCACTGCTTACTTGGCAGTTCTACAAATCACGCGCCGCGAGTGGCCCGTATTCGTGACGGATCATCTGTCCAGGTCCAACCCGCGAGCATTACATAATAGATTTTTCGATTTTCGATTACCCAGCAGCATTACATAATAGATAATACTGAGTACTGCGAGTTGCGAGTGGAAAGTGATCAGAGGCGGAGGCATAAGCATTGGTGGAGGGAGAGAGTGGAGAATTGGGGATGGGGACGTTGTGGTGGTGGACGACACTGGCCATAACCGTTTCCACACTGTTGGGAGACATCGCTGACAGTTTCGACGGCGGCACCCAACCCAAACAACAACTCACTCTCTGTGGGGAACTCATTCTCCCCGCCGGTTACCCTTGCTCCGAATATATGATTGAAACAAAGGATGGTTTCTTGTTAGGTCTTCAGCGTGTGTCTTCTTCTTCTCCTCGTATTGGGTATGCTGAAGAACGAGGCCCTCCGGTTCTGCTTCTGCATGGGCTATTCATGGCAGGCGATGCATGGTTTCTAAACACACCAGAACAATCATTGGGCTTCATCCTCGCAGATCATGGTTTTGATGTTTGGGTAGGAAATGCGCGTGGAACACGTTGGAGCCATGGGCATACATCTTTATCAGAGAAGAATAAGCATTTTTGGGATTGGAGTTGGCAGGAATTAGCTCTATATGATCTTGCAGATATGATCAATTACATCAATTCAGTAACAAACACAAAGCTATTTGTAGTTGGACATTCGCAGGGGACAATTATTTCTTTTGCTGCCTTCACTCAACCGGAGATAGTAGAAAAGGTTGAAGCTGCAGCTCTTCTATCTCCAATATCATACCTGGATCATGTTAGCGCACCATTGGTACTTAGAATGGTTAAGATGCAGATTGATGAGATGATTCTTGCCATGGGTGTTCATCAACTGAACTTCAAAAGTGACTGGGGAGCCAGTCTCTTGGTTTCCCTATGTGATACCCGTCTAAGTTGCAGTGACATGCTGTCGTCCATTACAGGAAAGAATTGTTGCTTCAACGAGTCACGCGTGGCTTTTTATCTTGATCAAGAACCTCACCCATCATCCTCCAAAAACTTGCACCACCTTTTCCAAATGATCCGCAAAGGTACCTTCTCCAAGTACGATTATGGAAAACTTAAAAATCTGATAGAGTATGGCAAGTTCAAACCACCAAAGTTCGACCTTAGTCGCATACCCAAATCATTGCCTTTGTGGATGGCTTATGGGGGAAATGATGCTTTAGCAGATATAACCGATTTCCAGCACACGCTGAAGGAATTGCCATCCACACCGGAGCTGGTCTATCTCGAAAACTATGGTCATGTTGACTTCATTTTAAGCTTGCAAGCAAAACAAGATCTTTATGACCCTATGATCAGATTTTTCAAGTCATTGGGCAAATATAGTAGTATTTAAAGCTTGCTTCCTTCCATTATGATAGATGTAATATAATGATGTATGATGTATAGGTCCACGAGTTATTACACATTTTGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00053	73227	77506	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01052	LIPA	EC:3.1.1.13	Steroid biosynthesis	map00100
			Lysosome	map04142

Gene Ontology

biological_process
GO:0006629 lipid metabolic process

molecular_function
GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000053s00006426.1	PF04083.11	Abhydro_lipase	40	101	5.10E-15
Glyur000053s00006426.1	PF00561.15	Abhydrolase_1	115	378	1.10E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	40.980
SRR1783600	control	41.200
SRR1783602	moderate drought stress	47.903
SRR1811619	moderate drought stress	47.538

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	43.171
DRR006520	Root Summer glycyrrhizin high producing strain	42.687
DRR006521	Root Winter glycyrrhizin high producing strain	3.044
DRR006522	Root Winter glycyrrhizin high producing strain	3.167
DRR006523	Root Summer glycyrrhizin low producing strain	31.070
DRR006524	Root Summer glycyrrhizin low producing strain	30.010
DRR006525	Leaf Summer glycyrrhizin high producing strain	37.348
DRR006526	Leaf Summer glycyrrhizin high producing strain	36.880

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	39.443
SRR2868004	Drought Stress (root)	44.703
SRR2967015	Control (root)	46.066

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	40.372
SRR9715740	Leaf	53.640
SRR9715741	Leaf	51.531
SRR9715739	Root	29.858
SRR9715742	Root	43.531
SRR9715743	Root	37.914

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.158
SRR8749028	MeJA induced 9h	4.979
SRR8749029	MeJA induced 9h	3.237
SRR8749030	Uninduced	1.432
SRR8749031	Uninduced	0.363
SRR8749032	Uninduced	0.620

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	47.409
SRR8400027	Control - Root	56.901