Gene detail information of Glyur000053s00006417 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G05620.2 | 3.00E-18 | uridine-ribohydrolase 2 |
| NR | XP_004498093.1 | 8.24E-20 | PREDICTED: probable uridine nucleosidase 2-like [Cicer arietinum] |
| COG | NP_354585.2 | 5.00E-08 | inosine-uridine preferring nucleoside hydrolase [Agrobacterium fabrum str. C58] |
| Swissprot | tr|Q8LAC4|URH2_ARATH | 9.00E-21 | Probable uridine nucleosidase 2 |
| trEMBL | tr|B9HGC2|B9HGC2_POPTR | 3.00E-20 | Inosine-uridine preferring nucleoside hydrolase family protein {ECO:0000313|EMBL:EEE90834.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00053 | 19564 | 21565 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000053s00006417.1 | PF01156.14 | IU_nuc_hydro | 87 | 147 | 5.30E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.978 |
| SRR1783600 | control | 0.849 |
| SRR1783602 | moderate drought stress | 1.979 |
| SRR1811619 | moderate drought stress | 1.895 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.846 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.248 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.466 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.130 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.467 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.510 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.176 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.024 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.385 |
| SRR2868004 | Drought Stress (root) | 0.725 |
| SRR2967015 | Control (root) | 0.347 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.098 |
| SRR9715740 | Leaf | 0.010 |
| SRR9715741 | Leaf | 0.047 |
| SRR9715739 | Root | 0.138 |
| SRR9715742 | Root | 0.530 |
| SRR9715743 | Root | 0.802 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.480 |
| SRR8749028 | MeJA induced 9h | 3.659 |
| SRR8749029 | MeJA induced 9h | 0.431 |
| SRR8749030 | Uninduced | 1.959 |
| SRR8749031 | Uninduced | 0.443 |
| SRR8749032 | Uninduced | 0.457 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.048 |
| SRR8400027 | Control - Root | 2.288 |