Gene detail

Gene detail information of Glyur000052s00005814

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G55020.1	lipoxygenase 1
NR	AAB71759.1	lipoxygenase [Pisum sativum]
Swissprot	tr\|P24095\|LOXX_SOYBN	Seed linoleate 9S-lipoxygenase
trEMBL	tr\|O24470\|O24470_PEA	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}

Sequence

Transcript Sequence

>Glyur000052s00005814.1
CTCTCCTACATCCATCATATAGCATATATAAAGAAAAAGATTAGTAGTACTGAGCAGCAAAGATGGGCATCTTTGACAAGGGGGAAAAGATAAAGGGGACTGTGGTGTTGATGCCCAAGAATGTGTTGGACTTAAACGAGATACTGTCCACCGTTGACGGTCCTAAAGGCGCCTTCGACTCTCTCCTTGAACTCGGTTCTAGTACGGTTGGCCAATTCTTTGACGTTGTTACTGCCTTCGCTGGCCGTAACGTCTCCATTAAGTTGATCAGTGCTACCAACACCGATGGAAATGGTAATGGGTTAGTTGGAAAGGAAACGTACGTGGAGAAACATCTCCCAACGTTTCCAACCTTGGGAGCGAAGCAGGATGCATTCAGTGTTAATTTTGATTATGATGCTAATTTCGGAATCCCAGGAGCATTTTACATTAGGAACTATACGCAATCTGATGAGTTCTTCCTTGTCAGCCTCACTCTCGAAGACATTCCTAATCATGGATCCATTCGGTTTGTTTGCAACTCCTGGGTTTACAACTTCAAAAAGTACAAAAGGGATCGCATTTTCTTTACCAGCGATACATATCTTCCAAGCCAAACACCAACTGCACTAGTTAAGTACAGAAAAGAGGAGTTGGAGAATTTAAGAGGAGATGGAACAGGGGAGCGCAAGGAATGGGAAAGAATCTATGACTATGATGTCTACAATGATCTGGGTGCTCCTGATAAGGGTGAACAGCAAGCTCGTCCAATCCTTGGAGATCCTAACAGTGAGAGTCCAGGCGAAGCTTATGTTCCAAGGGATGAAAATTTCGGTCACTTGAAGTCATCAGACTTCCTTACCTATGGAATAAAATCTTTATCTCAAACTGTGTTGCCTCTCTTTCAATCTATAATTTTTGATTTGCGAATCACGTCGAGTGAGTTTAATAGCTTCGAAGATGTGCGTGGACTTTATGAGGGTGGAATTAAGCTACCTACAGATATAATCAGCAAAATTAGCCCCTTACCAGTCCTCAAGGAACTCTTCCGCACTGATGGTGAACAAGTTCTCAAGTTTCCACCACCCCATGTACTCAAAGTTACCAAGTCTGCATGGATGACTGACGAAGAATTTGGAAGAGAGATGATTGCTGGTGTAAACCCTTGTGTAATTCAACTTCTCCAAGAATTCCCACCACAAAGCAAGTTAGATCCCACAGTCTACGGTGATCAATCTAGTACAATAACAAAGCAACACTTGGAGATTAACATGGAGGGGGTCACAGTAGAAGATGCATTTAATGGTCAAAGACTACTCTTATTAGATTACCATGATGCATTCATGCCGTATTTGGAGAGGATAAACAAAATTGCAAAAGCTTATGCTACCAGAACAATCCTATTCTTGAAAGATGATGGGACTCTGAAGCCACTGGCCATTGAATTGAGTTTGCCACATTCAAATGGAGTTCAGTTTGGTGCCGAAAGCAAAGTCATCTTGCCTGCAGACCAAGGTGTTGAAAGTACAATATGGCTATTGGCCAAGGCTCATGTAATTGTGAATGACTCGTTAAATACTCATGCAGTGATGGAGCCTTTCGTCATAGCAACAAACAGACATCTCAGTGTGCTTCACCCAATTAATAAACTTTTATATCCTCACTACCGTGACACAATAAATATCAATGGACTTGCTCGAACATCCCTAATTAATGCAGACGGCATTATAGAGCAATCCTTTTTGCCTGGACCATATTCTATTGAGATAGGATTGGCAGTTGAGGATCCCTCTGCACCACATGGCCTTCGTCTTCTGATAGAGGACTACCCCTATGCTGTTGATGGACTAGAGATATGGGATGCTATTAAGACATGGGTCCAAGACTATGTCTCCTTGTATTACCCAACAGATGAGGCAGTGCAAAAAGACACTGAGCTACAAGCTTGGTGGAAAGAAGCTGTAGAGAAAGGTCATGGTGACTTGAAAGATAAGCCATGGTGGCCTAAGATGCAAACTGTTAAAGACCTGATTGAGTCATGCTCCATTATCATATGGACTGCTTCAGCTCTTCATGCAGCTGTTAATTTTGGACAATATCCTTATGGAGGTTATATCCTGAACCGTCCAACACTTAGCAGNAGGTTGATCCCAGAAAAGGGAACTCCAGAGTATGATGAGATGGTGAAAAGTCCTGAGAAGGCATATTTGAGAACAATTACACCAAAGTATCAAACACTTGTTGATCTCTCTGTTATAGAGATATTGTCTAGGCATGCTTCTGATGAGGTGTACCTTGGGAATAGGGATAGTCCAGATTGGACGTCTGATTCAAGGGCAAAAGAAGCCTTCCAAAAGTTTGGAAGCAAGCTTGCAGAAATTGAAGGAAAAATCACAGGGAGGAACGGNGATCCTAGTCTGAGAAACCGTTATGGGCCAATGTTTGGCATCTTAAACAAGGGTGGTCAAAAGATCAAGGGGACTGTGGTGTTGATGCCCAAGAATGTGTTGGACTTCAACGCCATAACCTCTGCTGCTACCGGCGGTGTTGGAAGCGCCGTCGGGGGCATCCTTGGCTTGGCCACCGGCACGGCTGGCCAAATAATTGATGGTGCTACTGCNTTCTTAGGCCGTAGCATCTCCCTCCGTTTGATTAGTGCTTCCAAGACTGATGCACAAGGAAAGGGGCTAGTTGGAAAGGAAACCTTTTTGGAGAAACACATCCCAACTCTACCAACATTGGGAGCGAGGCAAGATGGATTCAGCATTCACTTTGAATGGGATGCTGAATTCGGAATCCCAGGAGCATTTTACATCAAGAACTATACGCAAGCTGAGTTCTTCCTTGTCAGCGTCACTCTCGAAGACATCCCAAACAGTGGATCCGTTCGGTTTGTTTGCAACTCCTGGGTTTACAACTTCAAAAAGTACAAAAGGGATCGCATTTTCTTCTCCAACAACATATATCTTCCAAGTCAAACACCAGCTGCACTAGTTAAGTACAGGGAAGAGGAGTTGGAGAATTTAAGAGGAGATGGAACAGGACAGCGCAAGGAATGGGAAAGAATCTATGACTATGATGTTTACAATGATTTGGGCAATCCTGATAAGAGTGACAAACTTGCTCGTCCAATCCTTGGAGGGTCCACCGCATATCCCTACCCTCGCAGGGTTAGAACCGGTAGAAAACCCACCAGAAAAGGCGAAGCTTATGTTCCAAGGGATGAAAATTTCGGTCACTTGAAGTCATCAGACTTCCTTACCTATGGAATAAAATCTTTGTCTCAAACTGTGTTGCCTCTNTTTCAAACTATAGTTTTTGATGAGTTTAATAGCTTCGAAGACGTGCGTGCACTTTATGAGGGTGGAATTAAGCTACCTACAGATATAATCAGCCAAATTAGCCCCTTACCAGTCCTCAAGGAAATCTTTCGCACTGATGGCGAACAAGTTCTCAAGTTTCCACCACCTCATGTAATCAAAGTTAGCAAGTCTGCATGGATGACTGATGTAGAATTTGCAAGAGAGATGGTTGCTGGTGTAAACCCTTGTGTGATTCGTCGTCTCNAAGAATTCCCACCCAAAAGCAAGCTAGATTCCACAGTCTACGGTGATCAATCCAGTACATTAACAAAAGAACACTTGGAGACTAACATGGATGGGCTCACAGTAGAAGAGGCACTTAATGCTCAAAGACTGTTCACATTAGATTACCATGATGTATTCATGCCGTATTTGGAGAGGATAAACAAAATTGCAAAGGCTTANGCAACCAGGACGATCCTATTTTTGAAAAATGATGGGTCTTTGATGCCACTCGCCATCGAATTGAGTTTGCCACATTCAAATGGAGTTCAGTTTGGTGCCGAAAGCAAAGTCATNTTGCCTGCAGACCAAGGTGTTGAAAGTACAATATGGTTATTGGCCAAGGCTCATCCATTCGTCATAGCAACAAACAGACATCTCAGTGTGCTTCACCCAATTAATAAACTTTTATATCCTCACTACCGTGACACAATAAATATCAATGGACTTGCTCGAACATCCCTAATTAATGCAGATGGCATTATAGAGCAATCATTCTTGCCAGGACCGAATTCTATTGAGATAGGATTGGCAGTTGAGGATCCCTCTGCACCACATGGCCTTCGTCTTCTGATAGAGGACTACCCCTATGCTGTTGATGGACTAGAGATATGGGATGCTATTAAGACATGGGTCCAAGACTATGTCTCCTTGTATTACCCAACAGATGAGGCAGTGCAAAAAGACACTGAGCTACAAGCTTGGTGGAAAGAAGCTGTAGAGAAAGGTCATGGTGACTTGAAAGATAAGCCATGGTGGCCTAAGATGCAAACTGTTAAAGACCTTATTGAATCATGCTCCATTATCATATGGACTGCTTCAGCTCTTCATGCAGCTGTTAATTTCGGGCAATATCCTTATGGAGAGATATTGTCTAGGCATGCTTCTGATGAGGTCTACCTTGGGGAGAGGGATGATCCAAATTGGACATCTGATTCAAGGGCAAAAGAAGCCTTCCAAAAGTTTGGAAGCAAGCTGGCAGAAATTGAAGGGAAAATTACAGAGAGGAACAACAATTCCAGTTTGAGGCACCGATATGGGCCGGTGCAACTGCCATACACTTTGCTCCTTCGTTCTAGTGAAGAAGGATTAACTTTCAGGGGAATCCCCAAC

Protein Sequence

>Glyur000052s00005814.1
MGIFDKGEKIKGTVVLMPKNVLDLNEILSTVDGPKGAFDSLLELGSSTVGQFFDVVTAFAGRNVSIKLISATNTDGNGNGLVGKETYVEKHLPTFPTLGAKQDAFSVNFDYDANFGIPGAFYIRNYTQSDEFFLVSLTLEDIPNHGSIRFVCNSWVYNFKKYKRDRIFFTSDTYLPSQTPTALVKYRKEELENLRGDGTGERKEWERIYDYDVYNDLGAPDKGEQQARPILGDPNSESPGEAYVPRDENFGHLKSSDFLTYGIKSLSQTVLPLFQSIIFDLRITSSEFNSFEDVRGLYEGGIKLPTDIISKISPLPVLKELFRTDGEQVLKFPPPHVLKVTKSAWMTDEEFGREMIAGVNPCVIQLLQEFPPQSKLDPTVYGDQSSTITKQHLEINMEGVTVEDAFNGQRLLLLDYHDAFMPYLERINKIAKAYATRTILFLKDDGTLKPLAIELSLPHSNGVQFGAESKVILPADQGVESTIWLLAKAHVIVNDSLNTHAVMEPFVIATNRHLSVLHPINKLLYPHYRDTININGLARTSLINADGIIEQSFLPGPYSIEIGLAVEDPSAPHGLRLLIEDYPYAVDGLEIWDAIKTWVQDYVSLYYPTDEAVQKDTELQAWWKEAVEKGHGDLKDKPWWPKMQTVKDLIESCSIIIWTASALHAAVNFGQYPYGGYILNRPTLSXRLIPEKGTPEYDEMVKSPEKAYLRTITPKYQTLVDLSVIEILSRHASDEVYLGNRDSPDWTSDSRAKEAFQKFGSKLAEIEGKITGRNGDPSLRNRYGPMFGILNKGGQKIKGTVVLMPKNVLDFNAITSAATGGVGSAVGGILGLATGTAGQIIDGATAFLGRSISLRLISASKTDAQGKGLVGKETFLEKHIPTLPTLGARQDGFSIHFEWDAEFGIPGAFYIKNYTQAEFFLVSVTLEDIPNSGSVRFVCNSWVYNFKKYKRDRIFFSNNIYLPSQTPAALVKYREEELENLRGDGTGQRKEWERIYDYDVYNDLGNPDKSDKLARPILGGSTAYPYPRRVRTGRKPTRKGEAYVPRDENFGHLKSSDFLTYGIKSLSQTVLPLFQTIVFDEFNSFEDVRALYEGGIKLPTDIISQISPLPVLKEIFRTDGEQVLKFPPPHVIKVSKSAWMTDVEFAREMVAGVNPCVIRRLXEFPPKSKLDSTVYGDQSSTLTKEHLETNMDGLTVEEALNAQRLFTLDYHDVFMPYLERINKIAKAXATRTILFLKNDGSLMPLAIELSLPHSNGVQFGAESKVXLPADQGVESTIWLLAKAHPFVIATNRHLSVLHPINKLLYPHYRDTININGLARTSLINADGIIEQSFLPGPNSIEIGLAVEDPSAPHGLRLLIEDYPYAVDGLEIWDAIKTWVQDYVSLYYPTDEAVQKDTELQAWWKEAVEKGHGDLKDKPWWPKMQTVKDLIESCSIIIWTASALHAAVNFGQYPYGEILSRHASDEVYLGERDDPNWTSDSRAKEAFQKFGSKLAEIEGKITERNNNSSLRHRYGPVQLPYTLLLRSSEEGLTFRGIPN

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00052	449754	463032	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15718	LOX1_5	EC:1.13.11.58	Linoleic acid metabolism	map00591

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005515 protein binding

GO:0016491 oxidoreductase activity

GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000052s00005814.1	PF01477.18	PLAT	74	169	1.00E-16
Glyur000052s00005814.1	PF00305.14	Lipoxygenase	181	562	7.00E-162
Glyur000052s00005814.1	PF00305.14	Lipoxygenase	562	786	1.40E-110
Glyur000052s00005814.1	PF01477.18	PLAT	866	956	1.50E-16
Glyur000052s00005814.1	PF00305.14	Lipoxygenase	967	1284	1.70E-138
Glyur000052s00005814.1	PF00305.14	Lipoxygenase	1284	1342	5.80E-23
Glyur000052s00005814.1	PF00305.14	Lipoxygenase	1341	1456	3.30E-61
Glyur000052s00005814.1	PF00305.14	Lipoxygenase	1456	1525	7.20E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	505.277
SRR1783600	control	511.109
SRR1783602	moderate drought stress	417.954
SRR1811619	moderate drought stress	417.474

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	202.289
DRR006520	Root Summer glycyrrhizin high producing strain	202.067
DRR006521	Root Winter glycyrrhizin high producing strain	4.644
DRR006522	Root Winter glycyrrhizin high producing strain	4.510
DRR006523	Root Summer glycyrrhizin low producing strain	8.562
DRR006524	Root Summer glycyrrhizin low producing strain	8.643
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.854
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.770

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	525.519
SRR2868004	Drought Stress (root)	264.794
SRR2967015	Control (root)	321.166

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	55.358
SRR9715740	Leaf	2.285
SRR9715741	Leaf	15.427
SRR9715739	Root	138.538
SRR9715742	Root	723.636
SRR9715743	Root	610.920

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.168
SRR8749028	MeJA induced 9h	3.614
SRR8749029	MeJA induced 9h	1.062
SRR8749030	Uninduced	32.832
SRR8749031	Uninduced	19.139
SRR8749032	Uninduced	46.285

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	502.942
SRR8400027	Control - Root	282.220