Gene detail

Gene detail information of Glyur000052s00005809

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G72790.1	2.00E-17	hydroxyproline-rich glycoprotein family protein
NR	XP_004510494.1	1.81E-162	PREDICTED: formin-like protein 18-like [Cicer arietinum]
trEMBL	tr\|I1KH74\|I1KH74_SOYBN	2.00E-129	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G03950.1}

Sequence

Transcript Sequence

>Glyur000052s00005809.1
ATGGAATACGATGNAGAAGACACGTTGGCAATGCCACCCTTCTGGGCTGCAAACGGCGACCACCAAAACCGCCGCCGTCTCCGCCGCTCTTACTCTCTGCTCCTCACCTCAACCTCATTCCTCGTACTCCTTCTCGTCANAGCACTCGTCTTGTCGCTCGTGGTGGTCCCCACGCTGCGATCTTTCACTTCACACATCTTCAGACCCAACACGGTGAAGCACTCCTGGGACTCCCTCAACCTCTTGCTCGTTCTCTTCGCTGTCGTTTGCGGCTTCCTCACCAAAAACGACANCAACCAAACCCAAACCCCGCGTTCCGATCACTACCACCACCACCCAACGACGTTCTCAGACCCTGCAACGCCGCCACANTGGTACGAGTACTCGAACCGGTCGTTCAACCGGTTGAGGAGCTTCGGATCCTACCCTGACCTCCGGCAACACTCGTCCATTGTCACCGACGATGAACGGTGCCTGTTTTACGACGACACTCACCTCCTACATCGTCACCGGTACTCGAGAATCCAAGCTGAAGAAGAACTCGGTGTCGAAAACGTGANGCCAACTGCCACCTTTGGTGAAGTTTCCGCTTCGCCGGTGCGAAAACCGTCGCCGCCTCCGCCGCCTCCGTCACCGCCTCCGCCGGTGGCGTCTTTTAGAACGGAAGCTGTTTGGAGAAATGTTGGGCGAACATCTCAATCGGAAATGATCGCGAAACCGGAAAACATTGATTTGGTTGCCGAGATTTCACAGCTGCCTTCGCCGCCGCCGGCGGTGAGGAAGATGAGAAGAGGGACTGCAACTAAAGAAAACGCGGCAACGGTCGCATCTGCGGGATTTACCGCATCGATGGTGCGGCAACCGGAGCCGGAGCCGCAACCGCCGCCGGTGACGAGAACGAAAGCTGTTCGAAGAAATACCAAGCGAACATATNAAGCGGAAACAATCGAGAAACCGGAGAGTAATGATTTTGTCGCCGGGAATTCTGAACCCCCGCTGCCGCTATCGGCGGTNAGGAAGAAGAAAAGAGGGACTGCAACTAAAGAGTTCTTGACGTCGTTTAGGGTGAACAGGAAGAAGCAAAGACAGAGAAGTGTTGAGAATTTTGAGAGCATTCTAGTAAATTCTGAACCTTTTCCCCTAGTTTTACAACCGCCGCCGTCAACACCGCCGCCTCCGCCGCCTCCTCCTCCGCCGCCTTCTTCAGTTTTTCACAATCTGTTCTCTTCCAAGAAGAGCAAACACAAAACACACTACCTTGTTCCTGTGGCAACCTACAAACCCCAGTCATCAAACAAGAGAGAGCATTCTCATAANTATAGCTTGGAAGATAAGAATAAGAATGTGATGGTCACAGGTAACGAGTCACCGTTGATCCCTATCCCGCCGCCGCCGCCGCCTCCACCGTTCAAGTTGCCGGCGTGGAAGTTCAGAGTGCAGGGTGACTTTGTTAGGATAGACAGCATTGGCAGCTCCAGGAGTGACTCACCAGATTTAGATGAAGCTGTGGAGTCACCAATTAGTCAACAAGAAGAAACAAGCCAATGCAATAGTCCCTNTGGTGAAGAGCCTGCAAGTGCAAGTGCAGCCTCATTGTTCTGTCNCAGCCCTGATGTTGATACCAAAGCTCACAACTTCATTGAGAGCTTCAGAGCTGGGTTGAGGATTGCCAAGATGAACTCCATGAAGGAGAAGCAAGGGATTGGGAGGTCCAATCTAGGCCCTTTACCAAACCCTTCATACCAAAAGAGAAACTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00052	416246	418003	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000052s00005809.1	PF05553.6	DUF761	536	566	0.00035

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.914
SRR1783600	control	8.457
SRR1783602	moderate drought stress	6.416
SRR1811619	moderate drought stress	6.648

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	41.521
DRR006520	Root Summer glycyrrhizin high producing strain	41.376
DRR006521	Root Winter glycyrrhizin high producing strain	4.987
DRR006522	Root Winter glycyrrhizin high producing strain	5.058
DRR006523	Root Summer glycyrrhizin low producing strain	51.457
DRR006524	Root Summer glycyrrhizin low producing strain	53.108
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.544
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.575

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.734
SRR2868004	Drought Stress (root)	4.468
SRR2967015	Control (root)	4.858

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.830
SRR9715740	Leaf	4.566
SRR9715741	Leaf	4.259
SRR9715739	Root	47.457
SRR9715742	Root	98.845
SRR9715743	Root	78.276

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	38.222
SRR8749028	MeJA induced 9h	65.916
SRR8749029	MeJA induced 9h	41.748
SRR8749030	Uninduced	72.684
SRR8749031	Uninduced	30.859
SRR8749032	Uninduced	45.009

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.762
SRR8400027	Control - Root	12.676