Gene detail

Gene detail information of Glyur000052s00005808

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G33090.1	0	aminopeptidase M1
NR	XP_003627208.1	0	Aminopeptidase N [Medicago truncatula]
COG	YP_006773912.1	8.00E-148	peptidase M1 membrane alanine aminopeptidase [Candidatus Nitrosopumilus koreensis AR1]
Swissprot	tr\|Q8VZH2\|APM1_ARATH	0	Aminopeptidase M1
trEMBL	tr\|G7LJ03\|G7LJ03_MEDTR	0	Puromycin-sensitive aminopeptidase-like protein {ECO:0000313\|EMBL:AET01684.1}

Sequence

Transcript Sequence

>Glyur000052s00005808.1
ACGAAACTGAGTGAGCTCTTTGGAGGAGGAAAATGGAGCAGAGCAAGAGCATAGATCAATTCAAAGGCCAAACAAGATTACCCAATTTTGCAATTCCAAAAAAATATGAACTTCATTTAATCCCTGATCTCTCTGCATGTACTTTTTCTGGCACCGTGCAAATTAGCCTTACCATCAATGAGAACACCAAGTTCCTTGTCTTAAACTCGCTGGAACTTGTTATCCTAAGTACTTGTTTCACCAACTCNTATGGCAAGTGCACTCCTCGTGATGTTGTTGTGGATAATGATGATGAGATACTAGTCCTGGTGTTTGATGAAACACTCAGTGTTGGAGAAGGNGTCTTGGTGATCGAGTTTTCTGGGATCCTCAATGAGCACCTGAGAGGATTCTATAGATGCACTTATGTTGATGGAGAAGTGAAGAAAAATATGGCAACAACCCAGTTTGAGGCAGTAGATGCAAGGCGGTGTTTTCCATGCTGGGATGAACCTGCTCTGAAGGCAACTTTCAAGGTAACACTTACTGTGCCATCAGAGTTGACTGCATTGTCTAATATGCCAGCTGAAAATGAAAAGCTAGATGGTGAATTAAAGACCCTTCATTTTGAGGAGTCTCCTATCATGTCAACTTATTTGGTGGCTGTTGTTGTTGGTTTATTTGATCATATTGAGGATACTTCTGCTGGGGTTTTGGTTCGTTTATATTGTCCTGTTGGAAAGAGTGATCAGGGGAAGCTTGCAATGGATATAGCTGTGAAGTCACTAGAAATATATACCAAGTACTTCTCAGTGCCTTATCCACTGCCCAAGCTGGATCTAGTTGCGGTTCCTGAATTTTCCGCTGGAGCCATGGAGAATTATGGTTTGATCATATACAGAGAAAATGATCTGCTTTACCATGACTTGTACTCTACACCTGCTAAGAAGCAAAGATTAACAATTGTCACAGCACATGAAGTAGCTCACCAATGGTTTGGGAATTTGGTAACTATGGAATGGTGGACTCATTTATGGCTCAATGAAGGTTTTGCAACATGGGTAGAAATACACCATGCACGCTCAATTATTGAAGTTTTTGATGCTGTCAGCTATGAAAAAGGATCTTCTGTAATTAGAATGTTGCAGGGTTACCTTGGAGATGTTACATTTCAGAAATCATTAAGCACGTATATAAGAAAATATCAAGCCCAAAATGCAAGGACAGAAGATCTATGGAATGTTCTTTCAGAGGTATCTGGTGTTCCAGTCAACTTAATGATGAATAATTGGACAAAGAGCACAGGATATCCGGTTATTCATGTTCAACTAAAAGATAATATTTTGGAACTGAAACAGTCGCGATTCCTTTTATCTGGTCTTCATGCTGATGGACAATGGATTGTCCCCATAACCTTGTGTATTGGTTCATATGAAAGACAGAAAAAATTTCTATTGGAGACAAGCCATGGAAGGGTGGACGTATCTGAACTGGTTCAATCTATTGGCNATGATAATGTAAATTCAAATAAAGATAAGCATGAAGAGGATAGTCAAGAAAATCTATGGGTCAAAGTCAATGTTGATCAGAGTGGTTTTTATAGGGTAAACTATGAAGACAAGCTTGCAGTTCAACTGAGGAAAGCAATACAAAACAATTACTTGCTGCCTGCTGATAAATTTGGCATTTTGGATGATGGAAGCGCTCTTTGCCAGGCTTGTGAACAGTCACTGTCATCTTTGCTTATGCTGATGGATGTTTATAGAAAAGAGTTTGATTATGTCATTGTATCAAAACTGATCGATGTTTGTTATAATGTTCTGCAAATCTCCATTAATGCCATTCCAGATTCTGTACATGAGTTGAAGCAATATTTTATCAGCCTTCTCATGTTTTCTGCAGAACAGTTAGGTTGGGATTCTATATCTGGAGAAGACCATTCTAATTCACTCTTGAGGGAAGAAGTTTTTCAGGCCTTGGCTACCTTTGATCATGATAAAACTCAGCAAGAAGCATTGCGCCGCTTTCAGATTCTGTTGAATGACAGGGACACTTCTCTGCTTTCAGCCAACACTAGAAAAGCTGCTTATATAGCTGTAATGAGGAATACTACCAGTGAAAGTAGGACTGGATTGGAGTCCCTATTGAGCTGCTATAGGAGCACTGATGTAGTGCAAGAAAGGGAAAGAATATTGCGTTGTATTGCATCAAGTGCAGACCCAAATGTTGTTCTAGAGGTTCTGAATCTTCTGTTGTCTGATGAGATTCTAGATCAAGATATCGTTTTTGTACTGAGGGGAATAAGCTCAGAAGGCAGTGGAACTGCATTGAAATGGTTGAAGGACAATTGGGAAAGAATCTTGGCCAAATATGGTGGTGGACTATTACTCACCAATTTCATAAGGCTAATAGTTCCACTGGTTAACAGCAACGAGGAAGCAGATGAGATAGAAGCATTTTTTGCCAGCCACATGAACCCTTCCATCGTTATGAACTTGAACTTGAGCATTGAGAAGATCCGTATCAAAGCAAGGTGGATTCAGAGTGCAAGGCAAGAGCACTCTCTGCCAGACTTAATCAAACAATTAGCTCAGAGGAAATGATAGCTCTGAGTCTCNGACATCAATTTCCTCTTAAAGCAAATAACACAAAATAGTTTCGAGCAGGCAGTATGTTCTGCCTCTAGTAAACTACTACAATCCTAATTTAGTTTCTATGCATGGAATTGTAAACATTGAGTAAAGTCCAATTTGGCAAACGTTGGGTCAAACAAAAAAAAGTGTTTATCAAGCTGTTATATATCTCTATAAAGTTTGTATTATCCTATTTGATTGAACTTTAAACTAAGTACTTGTATACTTGTTATATTTGTGGAATGCCAAGTCCATTCACTGGATAAATTTTAGTCTATTGTTTAATTTGCAGCAGACTCAGCAACATTCTTTCTAGCTGCATTCATCTTCCACATGCAATTGTGAATAGTAATACACTGAGTGACAAACTGAATTATGCTAACTGTCCATTGNAAACAATGTTTGAACCATAGCCTGGAAAAACACTCAAAATTTTACAGTCACAACATCCAAAACTGGCCATTTCTTATACACAAGCATAATAACTTAAAAACCACCCCACCCAATAAAAAAGAAAAAAGAGCACTACAAGAACTGTACGTCAGAATTCTCTTGCACAGAAACTAATTCCTCTATGAATTTGAAGTCTATATATTTGTCTGAACAAATCATCACCAGAAAAAACTGTTTAAAAAAAACCAAATAAATATCAAATTTGTAACTTCTGCTTGGTCTAGTTTCTCTTTTGGTATGAAGGGTTTGGTAAAGGGCCTAGATTGGACCTCCCAATCCCTTGCTTCTCCTTCATGGAGTTCATCTTGGCAATCCTCAACCCAGCTCTGAAGCTCTCAATGAAGTTGTGAGCTTTGGTATCAACATCAGGGCTGNGACAGAACAATGAGGCTGCACTTGCACTTGCAGGCTCTTCACCANAGGGACTATTGCATTGGCTTGTTTCTTCTTGTTGACTAATTGGTGACTCCACAGCTTCATCTAAATCTGGTGAGTCACTCCTGGAGCTGCCAATGCTGTCTATCCTAACAAAGTCACCCTGCACTCTGAACTTCCACGCCGGCAACTTGAACGGTGGAGGCGGCGGCGGCGGCGGGATAGGGATCAACGGTGACTCGTTACCTGTGACCATCACATTCTTATTCTTATCTTCCAAGCTATANTTATGAGAATGCTCTCTCTTGTTTGATGACTGGGGTTTGTAGGTTGCCACAGGAACAAGGTAGTGTGTTTTGTGTTTGCTCTTCTTGGAAGAGAACAGATTGTGAAAAACTGAAGAAGGCGGCGGAGGAGGAGGCGGCGGCGACGGTTTTCGCACCGGCGAAGCGGAAACTTCACCAAAGGTGGCAGTTGGCNTCACGTTTTCGACACCGAGTTCTTCTTCAGCTTGGATTCTCGAGTACCGGTGACGATGTAGGAGGTGAGTGTCGTCGTAAAACAGGCACCGTTCATCGTCGGTGACAATGGACGAGTGTTGCCGGAGGTCAGGGTAGGATCCGAAGCTCCTCAACCGGTTGAACGACCGGTTCGAGTACTCGTACCANTGTGGCGGCGTTGCAGGGTCTGAGAACGTCGTTGGGTGGTGGTGGTAGTGATCGGAACGCGGGGTTTGGGTTTGGTTGNTGTCGTTTTTGGTGAGGAAGCCGCAAACGACAGCGAAGAGAACGAGCAAGAGGTTGAGGGAGTCCCAGGAGTGCTTCACCGTGTTGGGTCTGAAGATGTGTGAAGTGAAAGATCGCAGCGTGGGGACCACCACGAGCGACAAGACGAGTGCTNTGACGAGAAGGAGTACGAGGAATGAGGTTGAGGTGAGGAGCAGAGAGTAAGAGCGGCGGAGACGGCGGCGGTTTTGGTGGTCGCCGTTTGCAGCCCAGAAGGGTGGCATTGCCAACGTGTCTTCTNCATCGTATTCCATCGGTGTATACTATGTTTCTGTTTTGGGTGGAAGAGAAAANTGAGTGAGCTTTCTTTTGAGGCACTTTTGCTTTGTGAGTGTGTGCTTGTGTGGGGTTCTGCTTTTTGGTGAACTTTCTTTGGGGTTGATTTGTTGTTAGTATACTATACTATACTATATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00052	416086	428126	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function

GO:0008237 metallopeptidase activity

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000052s00005808.1	PF01433.15	Peptidase_M1	15	342	1.20E-111
Glyur000052s00005808.1	PF11838.3	ERAP1_C	505	807	4.80E-45
Glyur000052s00005808.2	PF01433.15	Peptidase_M1	15	342	9.40E-112
Glyur000052s00005808.2	PF11838.3	ERAP1_C	541	731	2.20E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.369
SRR1783600	control	7.576
SRR1783602	moderate drought stress	6.458
SRR1811619	moderate drought stress	6.476

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.665
DRR006520	Root Summer glycyrrhizin high producing strain	19.817
DRR006521	Root Winter glycyrrhizin high producing strain	3.572
DRR006522	Root Winter glycyrrhizin high producing strain	3.533
DRR006523	Root Summer glycyrrhizin low producing strain	24.215
DRR006524	Root Summer glycyrrhizin low producing strain	24.304
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.604
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.588

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.275
SRR2868004	Drought Stress (root)	5.111
SRR2967015	Control (root)	6.409

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	49.871
SRR9715740	Leaf	65.762
SRR9715741	Leaf	88.941
SRR9715739	Root	32.540
SRR9715742	Root	56.774
SRR9715743	Root	49.517

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	27.626
SRR8749028	MeJA induced 9h	33.942
SRR8749029	MeJA induced 9h	33.857
SRR8749030	Uninduced	61.078
SRR8749031	Uninduced	27.739
SRR8749032	Uninduced	34.918

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.788
SRR8400027	Control - Root	15.140