Gene detail information of Glyur000052s00005803 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G67120.1 | 0 | ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding |
| NR | XP_008228379.1 | 0 | PREDICTED: midasin [Prunus mume] |
| COG | YP_008681855.1 | 3.00E-22 | nitric oxide reductase-like protein [Candidatus Symbiobacter mobilis CR] |
| trEMBL | tr|V4RXZ6|V4RXZ6_9ROSI | 0 | Midasin {ECO:0000256|PIRNR:PIRNR010340} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00052 | 352424 | 395985 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000052s00005803.1 | PF07728.9 | AAA_5 | 284 | 414 | 7.60E-08 |
| Glyur000052s00005803.1 | PF07728.9 | AAA_5 | 610 | 671 | 2.20E-07 |
| Glyur000052s00005803.1 | PF07728.9 | AAA_5 | 758 | 844 | 4.80E-08 |
| Glyur000052s00005803.1 | PF07728.9 | AAA_5 | 1007 | 1143 | 1.20E-22 |
| Glyur000052s00005803.1 | PF07728.9 | AAA_5 | 1307 | 1354 | 1.60E-06 |
| Glyur000052s00005803.1 | PF07728.9 | AAA_5 | 1435 | 1530 | 1.60E-14 |
| Glyur000052s00005803.1 | PF07726.6 | AAA_3 | 1706 | 1842 | 8.30E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.099 |
| SRR1783600 | control | 4.092 |
| SRR1783602 | moderate drought stress | 8.539 |
| SRR1811619 | moderate drought stress | 8.525 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.456 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.417 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.355 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.273 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.662 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.665 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.566 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.573 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.091 |
| SRR2868004 | Drought Stress (root) | 9.207 |
| SRR2967015 | Control (root) | 10.474 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.815 |
| SRR9715740 | Leaf | 4.713 |
| SRR9715741 | Leaf | 2.696 |
| SRR9715739 | Root | 0.496 |
| SRR9715742 | Root | 5.606 |
| SRR9715743 | Root | 5.172 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.659 |
| SRR8749028 | MeJA induced 9h | 7.021 |
| SRR8749029 | MeJA induced 9h | 4.257 |
| SRR8749030 | Uninduced | 1.170 |
| SRR8749031 | Uninduced | 1.009 |
| SRR8749032 | Uninduced | 1.272 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.278 |
| SRR8400027 | Control - Root | 11.038 |