Gene detail

Gene detail information of Glyur000052s00005802

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G72820.1	7.00E-128	Mitochondrial substrate carrier family protein
NR	KEH18441.1	0	substrate carrier family protein [Medicago truncatula]
Swissprot	tr\|F4HT41\|SAMC2_ARATH	1.00E-21	Probable S-adenosylmethionine carrier 2, chloroplastic (Precursor)
trEMBL	tr\|A0A072TMM7\|A0A072TMM7_MEDTR	0	Substrate carrier family protein {ECO:0000313\|EMBL:KEH18441.1}

Sequence

Transcript Sequence

>Glyur000052s00005802.1
ATGAGCATGAGTGTGGCCGAGGAAGAATCAGGTGAGGAGGTTCATGTGCCGGCCGAAATTGATTGGGAAATGCTTGATAAATCCAAGTTTTTCTTCCTTGGTGCTGCACTTTTCTCTGGGGTTTCTGCAACCCTGTACCCTGTTGTTGTGTTGAAAACCAGGCAGCAAGTGGCTCAGTCCCAGGTTTCTTGCATCAATACTGCATTTTCATTGATTCGGGGTGAGGGTTTTAGAGCACTGTACCGCGGGTTTGGGACTTCCTTGATGGGTACAATACCTGCCAGGGCTCTATATATGGCTGCCCTTGAGGTTACCAAGAGCAATGTNGGGACTGCTACCGTTAGGTTTGGTCTTGCTGAACCAACTGCTGCTGCAATTGCCAATGCAGCTGCTGGCTTGAGTGCAGCAATGGCAGCTCAACTTGTGTGGACCCCAGTTGATGTTGTGAGCCAGAGGTTGATGGTTCAAGGAGGTGGTGGTGGTTGTAATTCCAGTGATCCCAAGGCTCCTGCTTTTAGATACATCAATGGGATTGATGCCTTCAGGAAAATCCTGAGCACAGATGGTCCTAGGGGCTTGTATAGGGGTTTCGNGATATCAATTTTGACCTATGCACCTTCAAATGCAGTTTGGTGGGCCTCATATTCTGTTGCACAAAGGATGGTCTGGGGTGGCGTTGGNTACTACTTGAGCAACATGAAAGGTGGGGATAGCAGTGACGGTGCTGTGGCGAATAATGCATTGAGGCCGGATACAAAAACTGTGATGGCAGTTCAGGGAGTCAGTGCAGCAATGGCAGGGGGCATGTCTGCCTTAATCACCATGCCATTGGATACAATCAAGACAAGACTGCAGGTCTTGGATGGTGACGAGAATGGTCGACGNGGACCAACGGTTATGCAGACAGTGAGGGGTCTGGTTAAGGAAGGTGGTTGGATGGCTTGTTATAGAGGATTGGGACCAAGATGGGCTTCAATGTCAGTGTCTGCAACAACAATGATCACAACCTATGAGTTCCTAAAACGGCTTTCCGCAAAGAATCAAGAGGTTTTGACATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00052	338019	339077	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000052s00005802.1	PF00153.22	Mito_carr	35	108	3.20E-11
Glyur000052s00005802.1	PF00153.22	Mito_carr	125	222	1.60E-18
Glyur000052s00005802.1	PF00153.22	Mito_carr	257	347	2.50E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.156
SRR1783600	control	10.802
SRR1783602	moderate drought stress	12.429
SRR1811619	moderate drought stress	11.909

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.421
DRR006520	Root Summer glycyrrhizin high producing strain	11.371
DRR006521	Root Winter glycyrrhizin high producing strain	6.923
DRR006522	Root Winter glycyrrhizin high producing strain	6.942
DRR006523	Root Summer glycyrrhizin low producing strain	12.083
DRR006524	Root Summer glycyrrhizin low producing strain	11.141
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.374
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.544

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.008
SRR2868004	Drought Stress (root)	43.962
SRR2967015	Control (root)	49.982

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.959
SRR9715740	Leaf	17.830
SRR9715741	Leaf	18.792
SRR9715739	Root	13.699
SRR9715742	Root	15.032
SRR9715743	Root	10.697

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.322
SRR8749028	MeJA induced 9h	17.208
SRR8749029	MeJA induced 9h	9.246
SRR8749030	Uninduced	6.706
SRR8749031	Uninduced	8.291
SRR8749032	Uninduced	9.814

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.695
SRR8400027	Control - Root	30.510