Gene detail information of Glyur000052s00005790 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G13640.1 | 0 | phospholipid:diacylglycerol acyltransferase |
| NR | XP_004510434.1 | 0 | PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Cicer arietinum] |
| Swissprot | tr|Q9FNA9|PDAT1_ARATH | 0 | Phospholipid:diacylglycerol acyltransferase 1 |
| trEMBL | tr|I1KH92|I1KH92_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G04080.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00052 | 275711 | 281196 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00679 | E2.3.1.158 | EC:2.3.1.158 | Glycerolipid metabolism | map00561 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000052s00005790.1 | PF02450.10 | LCAT | 132 | 300 | 4.40E-31 |
| Glyur000052s00005790.1 | PF02450.10 | LCAT | 319 | 608 | 8.70E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.677 |
| SRR1783600 | control | 7.815 |
| SRR1783602 | moderate drought stress | 8.225 |
| SRR1811619 | moderate drought stress | 8.036 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.999 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.128 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.991 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.703 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.524 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.739 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 26.944 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 26.908 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 26.112 |
| SRR2868004 | Drought Stress (root) | 31.716 |
| SRR2967015 | Control (root) | 28.631 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 32.963 |
| SRR9715740 | Leaf | 40.512 |
| SRR9715741 | Leaf | 38.734 |
| SRR9715739 | Root | 3.561 |
| SRR9715742 | Root | 12.974 |
| SRR9715743 | Root | 10.325 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.420 |
| SRR8749028 | MeJA induced 9h | 5.991 |
| SRR8749029 | MeJA induced 9h | 1.731 |
| SRR8749030 | Uninduced | 2.974 |
| SRR8749031 | Uninduced | 1.251 |
| SRR8749032 | Uninduced | 0.950 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.037 |
| SRR8400027 | Control - Root | 18.884 |