Gene detail

Gene detail information of Glyur000052s00005782

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G11170.1	1.00E-35	Disease resistance protein (TIR-NBS-LRR class) family
NR	XP_003627244.1	9.46E-70	Tir-nbs-lrr resistance protein [Medicago truncatula]
Swissprot	tr\|O82500\|Y4117_ARATH	7.00E-38	Putative disease resistance protein At4g11170
trEMBL	tr\|G7L6R6\|G7L6R6_MEDTR	8.00E-69	Disease resistance protein (TIR-NBS-LRR class) {ECO:0000313\|EMBL:AET01720.2}

Sequence

Transcript Sequence

>Glyur000052s00005782.1
ATGGCATTAATGTGCCAGATAGCCCCGAAGAAGATATTGTTGGATATTGCACGTTTTCTGGATGGATTGCATTTGAAAGTTGACAACAGGAAACTGTTGTTGAAAGGGAGTAAGGAAGTGAAAGTGAGAGAGAAACTCACGCTTGAGCAACAACACGAAGGAAATGAACATCCTGGGCGATGTAATGGCGGAAGGAAGGCCAAGCAGATGGCGAAGGGAGTGTACATGGCGAAGATGGATTCACGGCTGAACTTGATCCATAAACGCCTCGCAAGTCCCGCTTCATTGTGGTTGTCAATTGCTGCCATTCAGATTCCGATTCCACTTGGCGATCTCGAACTCGAACTCGAACTCGGCGATGACACTCGTAGTCGCGGCGGTTCTGATTGGGTATCTTTGATATTGAGGGTGCAGAGTAGAGACAAAGGGAGATCCAGAATGTACAAGCACATATCCAATGGCGTACTCTTCTTGGCGAGATTTTTGTTTGTTTGTGGCCTCTTGCTTGGTTGGGGTGAAGCAGCAAACATAACATCAGGCAATGATTCTCCGTATCCAGTGATACCTCAATCCTGCTCCTCTGCTCCTTCTCAAATTACGTATGATGTCTTTGTTAGCTTCAGAGGACCAGACATCCGTCGAGGCTTTCTGAGCCATTTGGTTGAGGCCTTTTCTCGAAATCAAATCGTTGCTTTTGTAGACAACAAGCTTCACAAAGGAGACGAAATATCAGAGTCACTACTAGGGGCAATTGAAAGATCTTCGATTTCTGTGATTATATTCTCGCAGAACTATGCTTCTTCGCATTGGTGCCTTGATGAGCTTGTGAAGATAGTTGAGTCCAGGCGAAAAGAAGGACAGATTGTTCTGCCCGTTTTCTTCAAAGTAGATCCCACGGATGTTCGGCATCAAAAGGGAGCTTATGGAGATGCTTTTGCTGAACTTGAAAAGAAGCACAACTCGATCAGGGTGCTAGCCTGGAGATCTGCCTTGAAGGAAGCTGCTGATATCTCTGGCGACATTCCATGCTTAGCCAATCCATCGCACCTTGATTGGCTTCCCTTAAAACTTGAAGCTCGGATGGAGAGTGGAATACGACCTAAACCTAATTACACCAACTGCTTGGTGCAAGTTGGGATGGAAATAAAGGTCCCTAGTATGCCTGGCTCCGATGAAGCTTCTTGTTTTGCCAACTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00052	208162	213893	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000052s00005782.1	PF01582.15	TIR	203	332	4.10E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.581
SRR1783600	control	0.620
SRR1783602	moderate drought stress	0.747
SRR1811619	moderate drought stress	0.781

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.508
DRR006520	Root Summer glycyrrhizin high producing strain	2.682
DRR006521	Root Winter glycyrrhizin high producing strain	1.466
DRR006522	Root Winter glycyrrhizin high producing strain	1.563
DRR006523	Root Summer glycyrrhizin low producing strain	0.366
DRR006524	Root Summer glycyrrhizin low producing strain	0.458
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.696
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.834

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.435
SRR2868004	Drought Stress (root)	6.233
SRR2967015	Control (root)	9.131

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.682
SRR9715740	Leaf	1.250
SRR9715741	Leaf	0.608
SRR9715739	Root	0.057
SRR9715742	Root	1.469
SRR9715743	Root	1.170

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.685
SRR8400027	Control - Root	3.605