Gene detail

Gene detail information of Glyur000052s00005781

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17680.1	4.00E-101	disease resistance protein (TIR-NBS-LRR class), putative
NR	AET01724.2	0	disease resistance protein (TIR-NBS-LRR class) [Medicago truncatula]
COG	YP_007098491.1	4.00E-07	Leucine Rich Repeat (LRR)-containing protein [Chamaesiphon minutus PCC 6605]
Swissprot	tr\|Q9SZ67\|WRK19_ARATH	8.00E-96	Probable WRKY transcription factor 19
trEMBL	tr\|G7L6S0\|G7L6S0_MEDTR	0	Disease resistance protein (TIR-NBS-LRR class) {ECO:0000313\|EMBL:AET01724.2}

Sequence

Transcript Sequence

>Glyur000052s00005781.1
ATGAGGTTGGATCATGTGCACCAAGTTAACTCAAAAGGACTTATTGGGATTGGCAAACAAATTTCACATGTGGAGTCATTGTTGCAATTAGAGTCAAAAGATGTTCGTGCTATTGGAATTTGGGGGATGAGTGGTATTGGTAAAACAACTATTGCTGAAGAAGTATTTAATAGGTTGTGTTTTGAATATGACAGTTGTTGTTTTATGGCAAATAGAAGGCTTCGTCGTATGAAGGCTCTTGTTGCTCTTGATGATGTCAGTGATCCGCAACAATTAGAAAGTTTAATTGGAACACCAGATTGGCTTGGAGCGGGTAGTAGAATCATCATAACAACAAGAGATAAGCAAGTGCTTTCCAAACAGGTTGTTGATGTACATGAGGTTAAGGCATTGGACTTCAATGATTCTTTACGGCTTTTCAATTTGAACGCCTTTGAACAGAATCATCTAGAAATGGAGGAGTACTATGAGCTATCAAAGAGGATTGTCAATTATGCCAAAGGCATTCCATTAGTTCTTAAAGTCTTGGGTCATCTTCTTCGCGGAAAGGATAAAAGAATATGGGAAAGCCAACTAGAGAGACTTAAAAAAGTGCCAGTTAAGAAAGTTCACGATGTTGTTAGATTGAGTTATAAGGATCTTGATCGTGATGAGAAGAAGATATTTTTGGATATTGCATGTTTCTTGGATGGATTGCATTTGAAAGTTGACAACATGAAACTGTTGTTGAAAGGTACTCATGGTTATTCGGTGGATACTGAGTTGGAAAGACTAAAAGACAAGGCTCTTATAATTGTTTCTCGTGATGGTGTCGTATCGATGCCTAGCATCATACAAGAAACAGCATGGGAAATTGTTCGTGAAGAATCTATTAAAGACCCTGGATACCAAAGTCGGCTATGGGATTCTGATGACGTTTATCATGTACTGAAAAACAACAAGGGAAGTGAGGTTATCAGAAGCATAGCCATCAACTCGTGGATAATTAAGGGGCTGCAGTTAAACCCCAATGTCTTTGCCAAGATGAGAAAACTACAATATCTGGATATTTATAGTAAGGGGTATTGTATCTTTCCTCAGAATTGCAGGGGAATGCATCTTCCTCAAGGGCTTGAGTATTTGCCGAATGAACTCAGATATTTTCGTTGGACACATTATCCATTGGAATCCTTGCCATCCAAGTTTTCTGGAGAAAAACTTGTTGTATTGAGCTTGCAGCATAGCCGAGTGGAAAAACTTTGGCATAAAGAGAAGGATCTTGTGAATTTGAAGTTTCTCATACTCAGTTTATCCTCAAACCTGGTGGAGCTTCCAGACTTGTCAAAGGCAACAAATCTTGCAGAAATTGATATCCGTCTGTGTGTAGCATTGACTAGTGTACATCCATCCGTTTTCTCTCTCAACAAGCTTAAGAAATTTGATCTTGGTGGATGCATTTCCCTCACAAGCCTTCAAAGCAATATCCATTTAAGCTCCCTTCGCTATCTCTCCCTGGGTGGTTGCATTTCACTAAAGGAGTTCTCAGTTACCTCAAAGAACATGGTAAAACTGAATTTAGAACTCACGGGTATCAAGCAACTGCCCTCAACATTTGGACTTCAAACCAAACTTGAGAAGCTACGTCTTGGATACACTTACATTGAGAACTTGCCGGAAAGCATCAAGCATCTTACAAGGCTGAGACATCTAGACTTGAGGAATTGCAGCAAGCTTCGAAGCATACCAGAGCTTCCACCATCGCTGAAAACGCTAGATGCAAGTGGTTGTGTGTCATTGGAGACTGTAACTTTCCCTTCAACTGCTGTTCAACAACTGAAGGAAAACAAGGAAAAGGTTGCCTTCTGGAATTGCCTGAAGTTGGATGATCATTCTCTCAAGGCTCTTGAGCTGAATGCACAGATTAGCATGATGAAATTTGCACACCACCATGTATATGGGTTTGGTGGTTATGATGCTCAAGGCACGTACGTGTACCCTGGAAGCAGTGTCCCAGAGTGGTTGGTGTATAGGACAGCACATGATCAAATGACTATTGATCTGTCTTTTGCTAAGCAGCATTCCTCTGAGTTGGGATTCATTTTTTGCTTCATTGTTCCACAAGTGGCATCACAAGGTTTCACACTGATATTTAACATTAGTGTTGAAGAAGGTGAAGGTGAAGGTGTCACACTGTACTTGGATAGACCCAATCATGGAATTAAATCAGATCACGTGTATCTGATGTATGACCAAGGTCTTTCTCGCTATCTAAGTAGCCGAGTCAAACATCAGCCAAAGTTCAAAATTAGAGTTACAGCGGCGTCACCAACACTGAGATCAGACTACATACCACTAGTGTTGTTAAGAGGGTTTGGGGTCATCCCAACAAACACCTCACAGCATCTCAAGTTTATTTTGCAACAATTGGAGTTGAGTCATGGTCCAAGTATCCCAACTTCATCACTGATCAGTGTCCCGTATAACTTTTTATTACCAGTTTTCATAGGGCTTTTCATAAAGTTTGCTGTTGGTGACTTCTTAGATGGGTCACTATTAAGATTTCCCATTTTTTGGTCATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00052	204348	207276	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000052s00005781.1	PF00931.17	NB-ARC	21	70	4.20E-07
Glyur000052s00005781.1	PF00931.17	NB-ARC	72	243	1.60E-28
Glyur000052s00005781.1	PF12799.2	LRR_4	535	578	6.30E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.998
SRR1783600	control	1.054
SRR1783602	moderate drought stress	2.957
SRR1811619	moderate drought stress	2.973

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.097
DRR006520	Root Summer glycyrrhizin high producing strain	10.722
DRR006521	Root Winter glycyrrhizin high producing strain	3.496
DRR006522	Root Winter glycyrrhizin high producing strain	3.275
DRR006523	Root Summer glycyrrhizin low producing strain	4.941
DRR006524	Root Summer glycyrrhizin low producing strain	5.178
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.065
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.891

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.619
SRR2868004	Drought Stress (root)	12.301
SRR2967015	Control (root)	15.246

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.596
SRR9715740	Leaf	7.941
SRR9715741	Leaf	3.091
SRR9715739	Root	0.537
SRR9715742	Root	7.600
SRR9715743	Root	7.304

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.096
SRR8749028	MeJA induced 9h	6.876
SRR8749029	MeJA induced 9h	5.152
SRR8749030	Uninduced	2.294
SRR8749031	Uninduced	1.508
SRR8749032	Uninduced	0.647

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.348
SRR8400027	Control - Root	7.270