Gene detail information of Glyur000052s00005778 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G17455.2 | 1.00E-33 | ELF4-like 4 |
| NR | XP_006598696.1 | 2.44E-69 | PREDICTED: uncharacterized protein LOC100305734 isoform X1 [Glycine max] |
| Swissprot | tr|Q570U6|EF4L4_ARATH | 3.00E-50 | Protein ELF4-LIKE 4 |
| trEMBL | tr|I1MJZ6|I1MJZ6_SOYBN | 9.00E-70 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G00890.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00052 | 170598 | 170942 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000052s00005778.1 | PF07011.6 | DUF1313 | 14 | 99 | 1.50E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.076 |
| SRR1783600 | control | 14.927 |
| SRR1783602 | moderate drought stress | 10.485 |
| SRR1811619 | moderate drought stress | 11.228 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 30.205 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 29.331 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 28.711 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 28.168 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 31.994 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 31.828 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 30.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 29.089 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 56.315 |
| SRR2868004 | Drought Stress (root) | 84.483 |
| SRR2967015 | Control (root) | 70.239 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 59.657 |
| SRR9715740 | Leaf | 115.107 |
| SRR9715741 | Leaf | 79.712 |
| SRR9715739 | Root | 25.478 |
| SRR9715742 | Root | 28.917 |
| SRR9715743 | Root | 28.339 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 64.733 |
| SRR8749028 | MeJA induced 9h | 78.132 |
| SRR8749029 | MeJA induced 9h | 103.785 |
| SRR8749030 | Uninduced | 79.334 |
| SRR8749031 | Uninduced | 63.868 |
| SRR8749032 | Uninduced | 105.477 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 71.016 |
| SRR8400027 | Control - Root | 50.801 |