Gene detail

Gene detail information of Glyur000052s00005777.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G30100.1	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	XP_006598823.1	0	PREDICTED: uncharacterized protein LOC100794516 [Glycine max]
COG	NP_214409.1	3.00E-44	DNA helicase [Aquifex aeolicus VF5]
Swissprot	tr\|B6SFA4\|MAA3_ARATH	3.00E-69	Probable helicase MAGATAMA 3
trEMBL	tr\|K7MEG5\|K7MEG5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G00900.2}

Sequence

Transcript Sequence

>Glyur000052s00005777.1
CAGATCCACTGCCTTTCCTCATTGTGGGCATGTCATGGATATTGTTGCTNAAAAACAATAGAAGCAACACACCTGTTCAACGTTTTATTCAGAAGTTAGTTTGTATCCTTATGCATATGAGATGGGTTCTCGAGGAAGGCCATTATTTGACCTCAATGAGCCACCTGCAGAGGATAATGACGAGAGAGACGGTATTTTCTGCTTACAGCCCCAAAAAACACACCCATCAACAAATTCCCATGCATCTGACTTATTTGCAGCATCAACTGCTGCCCAAGGAATAATGAATAATCGTGCTTTTTCACATGCCTCATCTGTTTCTGGATTTCAACCTTTTGTTCGCCCTAAATCTGCTTCTGTCCCTGATGTAGATGCTGAATTGAAGAAAGCAGGAGATCAGGATACAAAAGCTTCCTCTAAGTCTAGTAAAGGTGAGGATGTGAAAGTTATGGATTCACGGATATCCGGTTCGGCAAATGCTCAAGCTGCAGAAAGGGAAGAAGGGGAATGGTCTGACGAGGAGGGGGGCTTTGCTGATGCAAATGGAGGTAATAATTTGCTTCAACAAAGTCAAGCTTCGGAAGAGCAAGCAACNTCTAGAACGTTGGATGGGTGTGTTGCAGTGGCTTCTGACAGTAAGTCTAGCAATATTAAGAGTTGTGATAGTATAAATGATGAAAAGAGTAGCCGTGCTTCTATAGGTCTAGAATCAGATTGTAGTGAACAGAAAAGCAATGGTATCCCAAATTCAGAAAGCAATGTGAAAAGTGAAGCTTCTACTGATGCACAGGAGGAACCCAGTTCAGTTCCCAAGCAAAAAGAAGTGAAGGGTATTGAAGCAAGTCATGCACTTAGGTGTGCAAATAATCCTGGGAAGAGGAAGATTGACCAACGTAAAGAGGAAATGTTGGGAAAGAAACGTAATAGACAGACCATGTTTCTTAACTTGGAAGATGTCAAGCAAGCAGGTCCTATTAAAACCTCAACCCCTCGAAGGCAGACTTTCTCATCACCTGTTATAAGTCGTACTGTAAAGGAAGTTCGTACTGTTCCTGCTCAAGTTGAGCGTGCTGGAATAGCCAAGGATCAAAAACAGGTTGACACATCTTTTGGTGAAGGTGGAACCCTAGCTGAAGCACATGAACCTAAATCTGATTGTAATGGTGATAATTCTGGGCTAATTGGCAGGTCTAGGAAGATAATCAGTGAGACAGAACCTCCTACAGAGGTCANTTTACCTCCCATACCTAGACAGGGTTCATGGAAACAACAGACAGATTTCAGGCCGCAGAAGAATGCACACCTTCCCAATAGGAAGTTGGGACAGAGTGGTCAAAGCTCCAATGATGTCAAGCTGGGAAACAAGAAACATCTTTCTATCAAGAAGCAGACTCCTGTCAGTGTCCAGTCCCAGGACACATCTGTTGAACGCCTCATACGGGAGGTGACCAGCGAAAAGTTTTGGCACCACCCAGGGGAGACTGAGTTACAGTGTGTTCCTGGACGGTTTGAATCAGTGGAAGAGTATGTTCGAGTATTTGAGCCTTTGCTTTTCGAGGAATGTCGTGCACAACTTTACAGTACCTGGGAAGAATCAACAGAAACAGTGTCAAGGGATACTCATATTATGGTTCGAGTGAAGGCAAATGAGTCAAGAGAAAGAGGTTGGTATGACGTGAAAGTACTTCCAGTACATGAGTTCAAATGGTCATTTAAGGAGGGTGATGTTGCGATTCTTTCGGCACCTAGGCCTGGATCAGTCAGATCCAAGCAGAACAGTTCATCTTTAGCTCAGGATGATGGGGAATCAGAAATCACTGGACGTGTGGTGGGTACAGTCAGGCGTCACATACCTATTGATACCCGTGATCCTCCTGGTGCAATACTCCATTACTATGTTGGGGACTCTTACGACCCTAGCAGGCAATTATACTCAGATGAGATTATTCTTTCCTTCAGGGCTGATGATGATCATATTGTAAGAAAACTTCAAATTGGAAGCATCTGGTATCTCACAGTGCTTGGTTCTCTTGCTACCACACAGAGGGAGTATATTGCTCTACATGCATTTCGTCGCTTAAATTTGCAGATGCAAACTGCAATCCTTCAGCCTAGTCCTGAACACTTCCCAAAATACGAGCAACAGGCCCCAGCGATGCCGGAATGCTTCACACAGAACTTTGTTGAGTATCTGCATAGGACCTTCAATGAACCCCAGTTGGCAGCAATCAAATGGGCAGCTATGCATACAGCCGCTGGTACAAGTAGTGGGACAACGAAGAATCCTTGGCCCTTTACCCTTGTTCAAGGACCTCCAGGAACAGGAAAAACACATACAGTATGGGGAATGTTGAATGTCATTCACCTTGTGCAGTATCAGCACTACTACACCTCTTTGCTTAAGCACGTAGCTCCTGAAAGCTACAAGCAAGCTAATGAGGTCAATTCAGAGAATGCCCCCACAGGATCTATTGATGAAGTTCTTCAAAACATGGACCAAAATCTCTTACGAACTTTGCCTAAGCTAGTCCCAAAACCTAGAATGTTGGTTTGCGCTCCTTCTAATGCTGCCACNGATGAGCTTCTTGCCCGTGTCCTTGATCGTGGATTTATTGATGGAGAGATGAAAGTATATCGACCTGATGTAGCTCGGGTTGGGGTTGATTCTCAGACGCGTGCTGCCCAAGCAGTTTCTGTTGAACGGAGAACTGAACAGCTTCTGGTCAAGACTCGGGAAGAAGTTGCAGGATGGATGCAACAGTTAAAGAACCGTGAAGCACAGTATACTCAGCAGTTACATTGTCTTCATAGAGATCTAAATGCTGCTGCTGCTGCTGTTCGTTCCCAAGGATCTGTTGGTGTTGACCCTGACCTTCTCCTGGCCCGAGATCAGAATAGAGATGTTTTGCTACAGACCCTTGCAGCTGTGGTTGAAGGCAGGGATAAGGTTCTGGTTGAGATGTCTCGTCTTGCCGTGTTGGAAGGTAGGTTTCGACCTGGTAGCGGTTTCAATTTGGAAGAGGCNCGTGCTAGTTTGGAGGCCAGTTTTGCCAATGAAGCTGAGATAGTTTTCACTACAGTTTCTAGCAGTGGTCGCAAGTTGTTTTCCCGTCTTTCCCATGGCTTTGATATGGTGGTCATTGATGAGGCAGCCCAAGCCAGTGAGGTGGGAGTTCTGCCTCCCCTCTCTCTTGGGGCAGCGCGATGTGTCCTTGTTGGAGATCCTCAGCAGCTTCCTGCTACAGTTATCAGCAAGGCTGCAGGAACATTGATGTATAGTAGGAGTCTTTTTGAAAGGTTCCAACAGGCAGGATGCCCAACAATGTTGTTGTCTGTACAGTATAGAATGCATCCCCAAATTCGGGATTTCCCTTCTAGGTACTTTTATCAGGGGCGCCTTACTGACAGTGAAAGTGTGGTTAAATTGCCTGATGAGCCATACTACAAAGACCCTTTACTTAGACCTTATATATTCTATGATATCAGACATGGGCGGGAGTCTCACAGAGGTGGATCAGTCTCTTATCAAAACATACATGAAGCACAATTTTGTCTCCGATTGTATGAGCATATTCAGAAAACGGTGAAATCTTTGGGTTTGGCAAAGATTTCTGTTGGCATAATCACTCCTTACAAGCTGCAGTTGAAATGTCTCCAACGCGAGTTTGAGGAAGTCTTAAATTCAGAGGAAGGGAAGGATCTATATATCAACACAGTAGATGCTTTCCAGGGTCAAGAGCGTGATGTCATCATAATGTCTTGTGTGCGTGCATCAAGTCACGGAGTTGGCTTTGTTGCAGATATACGACGAATGAATGTCGCCCTTACGCGTGCAAGAAGGGCCCTTTGGATCATGGGAAATGCGAATGCTCTGACCCAATCTGATGATTGGGCCGCGCTGATCACTGATGCAAAATCCCGAAATTGCTATATGGACATGGATTCTCTTCCCAAGGAATTGTTGGTGACCAAGGGACCTGTTTACACACCATTGCCTGGTAAGGCTTCCTCGAATATGAGGGGCATGAGATCAGGTGGACCGAGATATAGATCAATGGACATGCATATGGAGTCCAGGTTGGGAGCACCATCAGAAGATGATGAGAGAATGATTGCTTCAGTAAGCTCCAGAAATGGGAACCAACGTCCATCAAGGTATTCAACAGAGAACTCCTTAGATGATTTTAATCATTTGGGTGATAAATCCAGAGATGCCTGGCAGCATGGCATACAAAAGAAGCAGGGTTCAACTGGAACCATGGGAAAGAGAGACGTATAGCCGTTGCTTATCTGCAGATTCTTCTTGTGCATCAAGGGGGGGAGGATATTCCTATTCATGGGGCTATTTGATTCCCTCATTCTGTGATCTCCCACGGTTGCAAGCTCTCGGCCGGAAGAATCTTGGGGCTTTCGGCAAAGCTGCATGAGCCACAGATGCACAAGCTTTGAAAGATGGGAAGGAGCATGTAATGTGGATGAACCTACATTCTTGCATTGGACAGATGCTTGTGTTGGTACTTGCAATTTTGGGCGTAGCTGGGGATGTGTGGGGGGAAGACTGCAGACATTTGCCAGCCCACATTTATATGGAAGTGAATGTGAATGAAGACAGACAAACCTGCCTGAATGGCGGCGGGGGGGGGGGGGAATACTCAATTTTGTATCCATAAAATGAAAAGGAAACTGCATATGATTTTAGGGGGATCTTTACTATGGAAGCAGTTTGCTTGCAACTGACTTTTTGTACATACATGGCTTCACAACATTGTTTTAGCAAAATTGTTGTCTTTTCATCATTTTATGACAAACCG

Protein Sequence

>Glyur000052s00005777.1
MGSRGRPLFDLNEPPAEDNDERDGIFCLQPQKTHPSTNSHASDLFAASTAAQGIMNNRAFSHASSVSGFQPFVRPKSASVPDVDAELKKAGDQDTKASSKSSKGEDVKVMDSRISGSANAQAAEREEGEWSDEEGGFADANGGNNLLQQSQASEEQATSRTLDGCVAVASDSKSSNIKSCDSINDEKSSRASIGLESDCSEQKSNGIPNSESNVKSEASTDAQEEPSSVPKQKEVKGIEASHALRCANNPGKRKIDQRKEEMLGKKRNRQTMFLNLEDVKQAGPIKTSTPRRQTFSSPVISRTVKEVRTVPAQVERAGIAKDQKQVDTSFGEGGTLAEAHEPKSDCNGDNSGLIGRSRKIISETEPPTEVXLPPIPRQGSWKQQTDFRPQKNAHLPNRKLGQSGQSSNDVKLGNKKHLSIKKQTPVSVQSQDTSVERLIREVTSEKFWHHPGETELQCVPGRFESVEEYVRVFEPLLFEECRAQLYSTWEESTETVSRDTHIMVRVKANESRERGWYDVKVLPVHEFKWSFKEGDVAILSAPRPGSVRSKQNSSSLAQDDGESEITGRVVGTVRRHIPIDTRDPPGAILHYYVGDSYDPSRQLYSDEIILSFRADDDHIVRKLQIGSIWYLTVLGSLATTQREYIALHAFRRLNLQMQTAILQPSPEHFPKYEQQAPAMPECFTQNFVEYLHRTFNEPQLAAIKWAAMHTAAGTSSGTTKNPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYTSLLKHVAPESYKQANEVNSENAPTGSIDEVLQNMDQNLLRTLPKLVPKPRMLVCAPSNAATDELLARVLDRGFIDGEMKVYRPDVARVGVDSQTRAAQAVSVERRTEQLLVKTREEVAGWMQQLKNREAQYTQQLHCLHRDLNAAAAAVRSQGSVGVDPDLLLARDQNRDVLLQTLAAVVEGRDKVLVEMSRLAVLEGRFRPGSGFNLEEARASLEASFANEAEIVFTTVSSSGRKLFSRLSHGFDMVVIDEAAQASEVGVLPPLSLGAARCVLVGDPQQLPATVISKAAGTLMYSRSLFERFQQAGCPTMLLSVQYRMHPQIRDFPSRYFYQGRLTDSESVVKLPDEPYYKDPLLRPYIFYDIRHGRESHRGGSVSYQNIHEAQFCLRLYEHIQKTVKSLGLAKISVGIITPYKLQLKCLQREFEEVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASSHGVGFVADIRRMNVALTRARRALWIMGNANALTQSDDWAALITDAKSRNCYMDMDSLPKELLVTKGPVYTPLPGKASSNMRGMRSGGPRYRSMDMHMESRLGAPSEDDERMIASVSSRNGNQRPSRYSTENSLDDFNHLGDKSRDAWQHGIQKKQGSTGTMGKRDV

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00052	154682	161209	+

Gene family

Gene family	subfamily
EAR motif-containing Proteins	other

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000052s00005777.1	PF13086.1	AAA_11	695	1045	7.60E-58
Glyur000052s00005777.1	PF13087.1	AAA_12	1052	1248	1.20E-60

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.370
SRR1783600	control	14.523
SRR1783602	moderate drought stress	13.017
SRR1811619	moderate drought stress	13.027

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.149
DRR006520	Root Summer glycyrrhizin high producing strain	17.106
DRR006521	Root Winter glycyrrhizin high producing strain	17.929
DRR006522	Root Winter glycyrrhizin high producing strain	17.421
DRR006523	Root Summer glycyrrhizin low producing strain	17.351
DRR006524	Root Summer glycyrrhizin low producing strain	17.444
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.126
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.808

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.030
SRR2868004	Drought Stress (root)	44.003
SRR2967015	Control (root)	40.663

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.174
SRR9715740	Leaf	22.195
SRR9715741	Leaf	23.562
SRR9715739	Root	6.283
SRR9715742	Root	26.367
SRR9715743	Root	22.117

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.268
SRR8749028	MeJA induced 9h	19.493
SRR8749029	MeJA induced 9h	7.685
SRR8749030	Uninduced	13.455
SRR8749031	Uninduced	18.820
SRR8749032	Uninduced	16.328

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.771
SRR8400027	Control - Root	26.108