Gene detail

Gene detail information of Glyur000052s00005773

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G35550.1	1.00E-43	Duplicated homeodomain-like superfamily protein
NR	XP_003528497.1	4.80E-124	PREDICTED: transcription factor TT2 [Glycine max]
Swissprot	tr\|P10290\|MYBC_MAIZE	6.00E-54	Anthocyanin regulatory C1 protein
trEMBL	tr\|I1KHA7\|I1KHA7_SOYBN	2.00E-124	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G04210.1}

Sequence

Transcript Sequence

>Glyur000052s00005773.1
GTGATCCGTGTGGGGTTAAATGTCCCACAAATGAGAAGCCCCAAAAAGGTTTCCAATGCATGGAGATGGAGGCTTAACCGAACAGTACACAGCATATATATCAGTTGTGCTGTGGGTGGGTTGGGTTGGGGTTGGTCCCCTCCCCTCCTTCTGGACGTGGACGTACGAGGAGTACGGCACGCAATGCTCTCACCCCAAATTGCCTTTCCTAAGCTACTAAAGATAATATATGTAGTATAGTGTAGTGTGATAATCAATAAATACATAAAACCACTCTACTCTGCAGCAGTGTGAGGGTGTTAATTTGTTTTGAGTGCACAAGACAGAGACTGAGAGAGAGAGAGAGAGAGAGAGCAGTCACAAGAAGGCATATTAGAAACTACTGACTAACTAACTAAGATGGGTAGACGACCCTGCTGTCCAAAGGAGATCAATAAAGGAGCTTGGTCTCGTGAAGAAGATGAAANCCTCTCCAAATATGTTGCCATTCATGGTGAAGGCAAATGGCAGAAGGTTGCCCATAATGCTGGTTTAAAGCGGTGTGGAAAAAGTTGCAGACAGAGATGGTTGAATTATCTCAAGCCCGGTATAAAGAGGGGCGACATCTCTGCGGATGAAGAGGATATGATCATAAGACTTCATCGTCTTCTTGGTAACAGATGGGCTTTGATAGCCAAGAGGCTACCGGGACGAACAGACAATGAAATCAAGAACTATTGGAATACTAATCTGTCAAAGAAGCTGCAGAATAAACAGCCTACATCATCATCTGCTTCACTTCAACACAATCACATTAATCACAATCACAAATGTGGACACGATCACAAGACCAAACAAATCCATGTAGCACCCGAAGCTCCAAGGCCTAGGAGAGTTAAGGCTGTTCAATACAACAAATTTTTGGAGAATAATAATAATAATAATGGGTGTGAGTGTGATCATAGGGGTAGTGGTGCCAGCTGTCCCTCAAACAAAGTAGATCATCAGGGTAGTGATGAAGCTTCAATTACTGATTTCCTCATTGATATTGATCATCAAAACCAGTTGCAGCTGGCTGCTGATCATGATGACTTCAACTACTCTAAGATCCCACAAATGGAAGACCACAACAAGGTTATAGGCTCAACCAACAGTCCTATAAGCTCATCATCACCTTCTGATAATCACCATCATTGCCACCTCTTATTACCAGAGAAATTTGACCCTCTGGAGACCCTTTTGGATGTGGAGCTCAAGAAGATGGCTTCCTTTCTTGGACTTGAAAATGAGTTGCAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00052	128702	130717	-

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000052s00005773.1	PF00249.26	Myb_DNA-binding	13	60	7.90E-15
Glyur000052s00005773.1	PF00249.26	Myb_DNA-binding	66	110	6.10E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.514
SRR1783600	control	0.448
SRR1783602	moderate drought stress	2.080
SRR1811619	moderate drought stress	2.065

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.704
DRR006520	Root Summer glycyrrhizin high producing strain	1.498
DRR006521	Root Winter glycyrrhizin high producing strain	5.443
DRR006522	Root Winter glycyrrhizin high producing strain	4.916
DRR006523	Root Summer glycyrrhizin low producing strain	0.085
DRR006524	Root Summer glycyrrhizin low producing strain	0.086
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.086
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.066

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.700
SRR2868004	Drought Stress (root)	1.769
SRR2967015	Control (root)	1.564

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.667
SRR9715740	Leaf	0.503
SRR9715741	Leaf	0.568
SRR9715739	Root	0.000
SRR9715742	Root	0.095
SRR9715743	Root	0.049

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.719
SRR8749028	MeJA induced 9h	4.231
SRR8749029	MeJA induced 9h	3.339
SRR8749030	Uninduced	21.216
SRR8749031	Uninduced	14.337
SRR8749032	Uninduced	22.308

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.064
SRR8400027	Control - Root	0.614