Gene detail information of Glyur000052s00005770 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G54210.1 | 6.00E-46 | Ubiquitin-like superfamily protein |
| NR | XP_004510461.1 | 2.83E-62 | PREDICTED: ubiquitin-like protein ATG12-like [Cicer arietinum] |
| Swissprot | tr|Q1SF86|ATG12_MEDTR | 5.00E-64 | Ubiquitin-like protein ATG12 |
| trEMBL | tr|A0A061GCF0|A0A061GCF0_THECC | 1.00E-62 | Ubiquitin-like protein ATG12 {ECO:0000256|RuleBase:RU361201} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00052 | 105997 | 109134 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000052s00005770.1 | PF04110.8 | APG12 | 11 | 94 | 1.30E-34 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.824 |
| SRR1783600 | control | 5.318 |
| SRR1783602 | moderate drought stress | 4.078 |
| SRR1811619 | moderate drought stress | 4.324 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.930 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.314 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.384 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.649 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.242 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.589 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.593 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.502 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 31.323 |
| SRR2868004 | Drought Stress (root) | 32.961 |
| SRR2967015 | Control (root) | 30.529 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.969 |
| SRR9715740 | Leaf | 19.274 |
| SRR9715741 | Leaf | 17.881 |
| SRR9715739 | Root | 5.393 |
| SRR9715742 | Root | 8.387 |
| SRR9715743 | Root | 10.292 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.573 |
| SRR8749028 | MeJA induced 9h | 12.493 |
| SRR8749029 | MeJA induced 9h | 11.547 |
| SRR8749030 | Uninduced | 8.052 |
| SRR8749031 | Uninduced | 4.291 |
| SRR8749032 | Uninduced | 5.031 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.521 |
| SRR8400027 | Control - Root | 23.060 |