Gene detail information of Glyur000052s00005761 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G72610.1 | 5.00E-68 | germin-like protein 1 |
| NR | XP_004510470.1 | 9.08E-125 | PREDICTED: uncharacterized protein LOC101508818 [Cicer arietinum] |
| Swissprot | tr|Q9ZRA4|AB19A_PRUPE | 9.00E-88 | Auxin-binding protein ABP19a (Precursor) |
| trEMBL | tr|G7L6V2|G7L6V2_MEDTR | 4.00E-117 | Uncharacterized protein {ECO:0000313|EMBL:AFK34826.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00052 | 61859 | 71361 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000052s00005761.1 | PF00190.17 | Cupin_1 | 85 | 214 | 1.20E-20 |
| Glyur000052s00005761.1 | PF00190.17 | Cupin_1 | 313 | 427 | 1.20E-11 |
| Glyur000052s00005761.1 | PF00190.17 | Cupin_1 | 500 | 636 | 2.30E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.632 |
| SRR1783600 | control | 7.846 |
| SRR1783602 | moderate drought stress | 5.311 |
| SRR1811619 | moderate drought stress | 5.353 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.666 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.660 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.276 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.304 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 379.123 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 376.095 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 100.394 |
| SRR2868004 | Drought Stress (root) | 67.035 |
| SRR2967015 | Control (root) | 88.146 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 110.275 |
| SRR9715740 | Leaf | 48.768 |
| SRR9715741 | Leaf | 35.064 |
| SRR9715739 | Root | 23.834 |
| SRR9715742 | Root | 7.027 |
| SRR9715743 | Root | 9.067 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.915 |
| SRR8749028 | MeJA induced 9h | 7.894 |
| SRR8749029 | MeJA induced 9h | 3.007 |
| SRR8749030 | Uninduced | 1.232 |
| SRR8749031 | Uninduced | 0.220 |
| SRR8749032 | Uninduced | 0.367 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 28.621 |
| SRR8400027 | Control - Root | 20.661 |