Gene detail

Gene detail information of Glyur000052s00005757

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07040.1	6.00E-47	NB-ARC domain-containing disease resistance protein
NR	XP_003627291.1	0	Disease resistance RPP8-like protein [Medicago truncatula]
COG	YP_001516367.1	4.00E-06	hypothetical protein AM1_2038 [Acaryochloris marina MBIC11017]
Swissprot	tr\|Q39214\|RPM1_ARATH	8.00E-59	Disease resistance protein RPM1
trEMBL	tr\|G7L7I1\|G7L7I1_MEDTR	0	NB-ARC domain disease resistance protein, putative {ECO:0000313\|EMBL:AET01767.1}

Sequence

Transcript Sequence

>Glyur000052s00005757.1
ATGGGAAGGGAAAATAAAGTTAAGTGGATAAAGAGAAGATTGGAGTTACTGGAAGCTCTGATAAAGGATTATGATAAACTTGTGAAGAAACGGAATGAAGTAGTATCACGAGTCCGTTCTTTCTGGGATTCAGAAGACCTATCTGGAATTCATCTTCAGCTAAGCGAAGCTGAGAATGAATGGGTAGAATCAACAAGAGAAGTGGTCAAGGAAGCAAGAGGCTGTGTCGCCAAGTACTACAGACAAAAGCCAGGATCGTATTTGGGTCCTTTTACGGCTATCCTAAGAGCGATGCCCATTGTAGTTGTTCTCCATCAAATAGATGCTGTCAGAAGTAAGTTGTTGGATCATTTTAATGAGAGAAAAGAAAAAGCCAAGGACATTTATAAATCTATGGAGATTTCAAGGTCTAAGACTAGAAGTCTGCTGGATCAATTTGCAATTGAAGAGGAGGATAAATCTGTAGCTGAAGTGGCAGATAAATCTGTGGCAGCTCAAAACCAAAAGCAGAAGAAGCCTTCTACAAGTTTTGAAGATTTGATGAAGAAGGGCATGGACCTATTTTCTAGCATGGAAGAGAGATGGTCTATATATCTTCTGCTTCCACTGCATGCTTTCGTGAAGGAGTTGAGTCAGCTTCATTTAGAATCTGAAACAGAAAAGCTCTGGAATAAAGAAGCGGAGCAAATAATTGAAGACGCAGAGATCTGCATTAGCAACTACTTATGGTGGGTTCCAGCTTTTAGCATATTGAAGAAGCTAAAGAATGACATTCCCTTTGTTACGCATCAATTCAGAGAGGGGATGAGGCTCATTGTCAGAGAGTTTGATAAACTGCTTAGGAGGAAGGACGAGGATAGTTTAACTTTTATTGACAGAGCTGCAGAAAAGTCAACCTTCCCATCTATAACAGATGACAGAGAAATCACATCGGCTATTAAAAGCATCCACAGAAAGCTGAACAACCTGGACAGAAGCTCACCGCAAGTAGCTGATGAGATGAACTCACTGTATGATGAATTGGATGAAACGCATAAGCAGCTTCAGAAAGCAGAAGAAACGGCAGGGAAAAATGCTTGTATGGAGCAACTAAAGTCCATTGCTCAGGAGGTGGACAATTTTTTTGAAAGGTATATGGATAAACCTGAGCTCAAACGGCATGAGATCAGAGAAGCTATTGGTCTTCTTCAGAAAATAACAAGGATCTGTACCATCGAAAGACAGGAATTGACCAAAGTAGTTGGTTTGAAAAATGAAGTACGAGATTTGGTGTCGAAGCTGACCACAAGCAGTGATAATAATCCTTCGATACTTTCCATTGTGGGGATAAAAGGTGTGGGGAAGACAACTCTGGCAAAGGCAGTTTTTTACAACAAAAGTGTAGTCAAACACTTCCCGATCCGTGTCTGGGTGACACTGACTGAAGGAGCAGCCAAAAAAGAACGCGTTCTGCTCATGAAAAAGGATGGTACTAAAGACCAGACATTGGATGTCACTCAGGTATGTGATCACTTGAAAGAGAAGCTATGCCTTGTTGTTCTAGATAATGTCTCAAAAATAGTAGATTTTGCTAAACTACGTACAAAGTTATCTCGATCTGGATGGACAAACGGGAGCAGGATAGTGCAGACAACACGCTTTACGAAGGTGGCTTTGCATGCTGACAGTAGTAGCACCCCTCACCACATTCGACTACTAACCAAGGAAGAGAGTTGGGCATTGTTTCAGAAGGTGGCCGGCATTGAAAACCCCAAAAAAAAGTTAGAACCAAAAATGGAAAAATATGCAAAAAAGGTAGTGGGAAAATGTGGGGGCTTACCACTTGCAATCTTATCTCTTGGGTGTTTCATGTCAGCGAAGGGTATAAGTCAAGGGAGCTTATCGTCGGTACTTAAACAAATCAATCATGGCCATTACAAATCACGTTGGCTGCGAGATTGGGAAAACAACCATGAAGAATTGAGTAAAACTGTGAGGGACTGTCTCTATTACTTCACACACTTCCCTGTAGACTATGAAATCCCAGCGAGGAGATTAGTAAATCTATGGGTTGCAGAAGGGCTGGTGCAACAGAACAGCCAAAAAACACCCGAAGACACTGCAGAAAGTTATTTAGAAGAGTTGAGAGACCACAACATGATTCAAGTAGTGGCACTAAAGTCCAATGCCAAGATTAAGACATGTTGCTTGCCAAGTATGTTCAGAGAAATCATCTTGCAAGATAGCAATAGCACAAACCGCAGCCAGTACTTAGGTACTCATCTAGATCGGCGATTTGCCTATCATTTTGATGATCATGGTCTTGCTGCAAACTCGGCAGAAGTATTCAGCAAGAAAGGCGTTCCCCTGTCTGTTCTTTTCTTTGACAAGCGAGAGGGAAGTAAACCAGGAGAACACGTAGGGAAGATCCTTTCAGCAGGCATTGCAAGTGAGCAGTACATAGAGATCAAAGTTCTTGATCTTGAACGCATATTCAGACCTCACCTGCCAGGGACTTTAAGCAAGCTCAGTAATCTCAAGTATCTTAGCTTAAGATGGACTTACCTGGAGGAATTCCCCGTATGCATATGCAAACTTGTGGAGCTGGAAACACTGGATTTAAAGCATACATGTATCCGTGTCATCCCTAGCTCAATCTGGAAATTGAAGAAACTGAAGAAGCTATATCTGGCCCAAAAATATCGAAGTAGACTCGAGGGCAAGCCTGGGGGAAACTTTCAGGAAAATCTCCACACACTATGGGGTGTGTTCTTGTACGGGAGTTACCCTCTTCTTGGTTACCTTCACAAGCTGAAGAACCTTCAAAAGCTAAAATTAGCTTTCCAGTTGAAAGGACCAGTGCAGGAGACACTTGCAAAGGAGGTTGTGAAGCTTGAACAGCTCCATTCACTGAGACTTAGATCGGTAGACGAAATTGGTGATCCTAAAAAACTAATATTGAAGAATATGTCAAAGCTGGCCAAGCTCTCATCCCTCCAGTTGTTTGGAAAAATAAAGGATAAACTAAGCATGAGCCGCCTCCCACAAAATCTCACTGATCTCACCCTGTCAGCTTCTAAACTCTCAGATGATCCTATGCCGGAGTTGCAGAACCTGCCCAAGCTCAAGTCGTTGTGTTTTTATGCTGACTCTTATGCAGGGAAAAAGATGGTTTGTGCCTCAGGCAGCTTTCAACAACTTCAAGTGCTAAGGTTCTGGAATCTAAGGAACCTGGAAGAATGGGATGTAAAGGAAGGAGCGTTGTCTAGCCTCATAGAGTTTGAAGCCCGGTCCTGCGGAAATTTGGCATGTCCCACTGGGTTGAAGTATTTGAAGACTCTTCAAATGATAAAGTTACGTAAAATGTCAAGGTCATTCGTGAAAGAAGCCTTTTTACATCGTAAGAAGGCGTTACTGGATGACATTGAGATTGATCATGATTGA

Protein Sequence

>Glyur000052s00005757.1
MGRENKVKWIKRRLELLEALIKDYDKLVKKRNEVVSRVRSFWDSEDLSGIHLQLSEAENEWVESTREVVKEARGCVAKYYRQKPGSYLGPFTAILRAMPIVVVLHQIDAVRSKLLDHFNERKEKAKDIYKSMEISRSKTRSLLDQFAIEEEDKSVAEVADKSVAAQNQKQKKPSTSFEDLMKKGMDLFSSMEERWSIYLLLPLHAFVKELSQLHLESETEKLWNKEAEQIIEDAEICISNYLWWVPAFSILKKLKNDIPFVTHQFREGMRLIVREFDKLLRRKDEDSLTFIDRAAEKSTFPSITDDREITSAIKSIHRKLNNLDRSSPQVADEMNSLYDELDETHKQLQKAEETAGKNACMEQLKSIAQEVDNFFERYMDKPELKRHEIREAIGLLQKITRICTIERQELTKVVGLKNEVRDLVSKLTTSSDNNPSILSIVGIKGVGKTTLAKAVFYNKSVVKHFPIRVWVTLTEGAAKKERVLLMKKDGTKDQTLDVTQVCDHLKEKLCLVVLDNVSKIVDFAKLRTKLSRSGWTNGSRIVQTTRFTKVALHADSSSTPHHIRLLTKEESWALFQKVAGIENPKKKLEPKMEKYAKKVVGKCGGLPLAILSLGCFMSAKGISQGSLSSVLKQINHGHYKSRWLRDWENNHEELSKTVRDCLYYFTHFPVDYEIPARRLVNLWVAEGLVQQNSQKTPEDTAESYLEELRDHNMIQVVALKSNAKIKTCCLPSMFREIILQDSNSTNRSQYLGTHLDRRFAYHFDDHGLAANSAEVFSKKGVPLSVLFFDKREGSKPGEHVGKILSAGIASEQYIEIKVLDLERIFRPHLPGTLSKLSNLKYLSLRWTYLEEFPVCICKLVELETLDLKHTCIRVIPSSIWKLKKLKKLYLAQKYRSRLEGKPGGNFQENLHTLWGVFLYGSYPLLGYLHKLKNLQKLKLAFQLKGPVQETLAKEVVKLEQLHSLRLRSVDEIGDPKKLILKNMSKLAKLSSLQLFGKIKDKLSMSRLPQNLTDLTLSASKLSDDPMPELQNLPKLKSLCFYADSYAGKKMVCASGSFQQLQVLRFWNLRNLEEWDVKEGALSSLIEFEARSCGNLACPTGLKYLKTLQMIKLRKMSRSFVKEAFLHRKKALLDDIEIDHD

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00052	39300	42881	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000052s00005757.1	PF00931.17	NB-ARC	417	692	2.50E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.162
SRR1783600	control	0.173
SRR1783602	moderate drought stress	0.201
SRR1811619	moderate drought stress	0.209

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.207
DRR006520	Root Summer glycyrrhizin high producing strain	0.251
DRR006521	Root Winter glycyrrhizin high producing strain	0.080
DRR006522	Root Winter glycyrrhizin high producing strain	0.094
DRR006523	Root Summer glycyrrhizin low producing strain	0.323
DRR006524	Root Summer glycyrrhizin low producing strain	0.335
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.380
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.368

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.330
SRR2868004	Drought Stress (root)	4.246
SRR2967015	Control (root)	4.232

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.239
SRR9715740	Leaf	3.034
SRR9715741	Leaf	4.024
SRR9715739	Root	0.204
SRR9715742	Root	0.712
SRR9715743	Root	0.610

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.339
SRR8749028	MeJA induced 9h	0.620
SRR8749029	MeJA induced 9h	0.343
SRR8749030	Uninduced	0.463
SRR8749031	Uninduced	0.681
SRR8749032	Uninduced	0.323

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.520
SRR8400027	Control - Root	0.717