Gene detail

Gene detail information of Glyur000052s00005754

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G13840.1	9.00E-120	GRAS family transcription factor
NR	XP_003627294.1	0	Nodulation signaling pathway 1 protein [Medicago truncatula]
Swissprot	tr\|Q4VYC8\|NSP1_MEDTR	0	Nodulation-signaling pathway 1 protein
trEMBL	tr\|G7L7I4\|G7L7I4_MEDTR	0	GRAS family transcription factor {ECO:0000313\|EMBL:AET01770.1}

Sequence

Transcript Sequence

>Glyur000052s00005754.1
ATGACCATGGAACCAAACCAAACATCAGATCACATTCTGGACTGGCTTGAAGGTTCTGTCTCTTTCTTTCCATCAATATTCTTGGATGATCCCTATAACAATTCTGGTTGCATCCAAGAGTATCAGTTGTGGGATCATGGCCAAGACATAAGCAGCCAGTACCAAATCGACACCAATACCGGTTCCCCTAATGCCGCCTCCAATAGTACCACCACAACCATTGTTGCTGCTGCTGCTGCCGCTACTAGTACCACTACTACCAGCACAACAACATCCCTTGAGCCTTATGGTTCTAACAACAACAACCACCAACCCCTTTCTGATTTGCCCAAGAAACGAAATGCCACTGATGAGTCAAGTCCAAGCCTCAAACCATCACAAAACCACAAGAACAAGAGACTCAAGAGCCGTGGTCCAATGAATAATGAAGCTGATAATAATGGAGATGCAGCTCTTGAAGGGTCGACAGTGGTAATTAAGAAACCTGGTGGGAACAAGAAAGGTGCAGCTAAGGCTAATGGGAATAACTGCAACAGTGGAAACAACAAGGATGGTAGGTGGGCTGAGCAGTTGCTCAACCCTTGTGCTGCAGCCATAACTGGTGGAAACCTGAATCGTGTGCAACACCTCTTATATGTTCTCCATGAGTTAGCCTCACCTACTGGTGATGCAAACCACAGGCTTGCAGCTCATGGTCTCCGAGCACTGACACACCATCTATCCTCTTCTTCTTCATCTACCTCTTCAGGGCCTATAACTTTTGCAACCACAGAGCCAAGGTTCTTCCAAAAGTCACTACTCAAGTTCTATGAGGTTAGCCCTTGGTTTTCCTTTCCTAATAACATAGCAAATGCTTCCATCCTTCAAGTTCTTGCTCAAGAGCCAAACCATTCACGTGCCCTTCACATCCTTGACATTGGGGTCTCTCATGGTGTGCAATGGCCAACTTTACTAGAGGCCTTGAGTCGTCGACCCGGTGGACCTCCTCCTCTCATTCGCCTCACTGTGGTTACTGCTGCTTCCTCCACTGAAAATGGCCAAAACATGGAGACCCCATTTGCAATAGGTCCAGCTGGTGATAACTTCTCTTCTAGACTCCTTGGTTTTGCTCAGTCCATGAATGTCAATTTGCAGATAAACAGGCTGGATAATCATCCATTGCAGACACTGAATGCTCAAAGTGTTGACACCTCCCCGGATGAGACCTTTATAGTGTGTGCACAGTTTAGGCTGCACCACTTGAATCACAACAACACTCCTGATGAAAGGAGTGAATTTCTGAAGGTGTTGAGAAACATGGAGCCCAAAGGGGTGATACTGAATGAGAACAACATGGGGTGTTGCTGCAATAGCTGTGGGAATTTTGCCACTGGGTTCTCGCGAAGAGTGGAGTACTTGTGGAGGTTTTTGGATTCAACCAGTTCAGCATTCAAGGGTCGTGAGAGTGATGAAAGGAGAGTGATGGAAGGTGAGGCTGCAAAAGCATTGACAAACCAGCGTGAGATGAATGAAGGGAAAGAAAAATGGTGTGAGAGAATGAAAGAAGCCGGGTTTGTAGGGGAAACACTTGGAGAGGATGCCATTGATGGGGGTCGAGCTTTGTTAAGGAAGTATGATAGTAATTGGGAGATGAAAGTAGAAGAGAACAATACAAGTGTGGGACTATGGTGGAAGGGGCAACCTGTTTCTTTCTGTTCTCTGTGGAAACTGGATGGGAACTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00052	32725	34446	-

Gene family

Gene family	subfamily
Transcription Factors Family	GRAS

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000052s00005754.1	PF03514.9	GRAS	189	569	1.70E-78

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.379
SRR1783600	control	0.386
SRR1783602	moderate drought stress	0.245
SRR1811619	moderate drought stress	0.264

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.233
DRR006520	Root Summer glycyrrhizin high producing strain	0.233
DRR006521	Root Winter glycyrrhizin high producing strain	0.130
DRR006522	Root Winter glycyrrhizin high producing strain	0.126
DRR006523	Root Summer glycyrrhizin low producing strain	2.277
DRR006524	Root Summer glycyrrhizin low producing strain	2.367
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.241
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.291

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.170
SRR2868004	Drought Stress (root)	21.454
SRR2967015	Control (root)	19.090

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.074
SRR9715740	Leaf	0.615
SRR9715741	Leaf	4.377
SRR9715739	Root	1.223
SRR9715742	Root	2.088
SRR9715743	Root	1.978

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.270
SRR8749028	MeJA induced 9h	17.873
SRR8749029	MeJA induced 9h	11.767
SRR8749030	Uninduced	27.508
SRR8749031	Uninduced	9.869
SRR8749032	Uninduced	12.842

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.336
SRR8400027	Control - Root	1.745