Gene detail

Gene detail information of Glyur000052s00005749

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G54130.1	0	RELA/SPOT homolog 3
NR	XP_004510478.1	0	PREDICTED: uncharacterized protein LOC101511084 [Cicer arietinum]
COG	YP_004174294.1	3.00E-91	GTP pyrophosphokinase [Anaerolinea thermophila UNI-1]
Swissprot	tr\|Q9SYH1\|RSH3C_ARATH	0	Probable GTP diphosphokinase RSH3, chloroplastic (Precursor)
trEMBL	tr\|I1MK11\|I1MK11_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G01040.1}

Sequence

Transcript Sequence

>Glyur000052s00005749.1
AGCAAACTTATCCTAAANTAAGTTATCGTCAAAGTTTAGCTTATCCGAATCATCATTAATTAACCTGAGCTGGTAATTCCCATGAAGTCCGGAGGACAACGCTGTCATTTCCCACCACCCTCCTTTCCTTTCCCTGGTGGCCGCTGAGCCATTTTCTCCAGCTCCAAAGCCATCACAAAACAACAACATAGAAGACACATTCTGCGGATTTCTAAGACCAAAAACGAACTAACCCAATCTCTCTCTCTCTTCCCCTCTCTTTCGTAGCCTCCATCTTCATTCTTCAAAGCGTATTTGACTCTCTCTCCTCCAAATCCAGGGTCCTCCCATTTGTAAATTCTTCTCTATTTAGGGTTCTTTTGCTTCACCCACCATCCATCTCTTTGAAAAAAAAAACCTGTATATATAATACACCCAGCTCAATAGAAAGAGAAAAAAAATTGAAAATCGTTGAATTCTTCAAACAATCTCCATTCCCAATATTTTTTTTTATTCTCTGTACAGGCCATATGGAAATACTTTTCTCCTCTGTTTGAGTCACCCTTTTTACCCTTTTAGATTGGGAGCCACCAAACAGTAACTAGGTCACTTGAAATCATTGGAGCTTGCACCTTTTCTCCTGGGGCTTCCGAAAAATTTATTTTTTATAAAAAAAAATCTAAATCTAATTGTTGGGTTATCCATTTTTCTTAGATTTATAAAAAGTGAAAAAAATTGTAACTTTACCAATTATTTCGGTGCTTGAGCTTGGAATTGGAAACCCCAATTCCCACAAAAAGGATAAGAAGAAGAAGAAGAAGCAGCAGCAGCAGCAGAAGAAGAAGCTTTTGTTTTGTTTTCATGGCGGTGTCAACTATAGCTTTATACGCGAGTCCACCGAGCAGTGTGTGTTCCACGCCGCACCCTTCCTACGACTTCGAATTGGGGTCTCGATCTTCTTCGCCGGCGTCAACAGCGACGGCACCGGCATCTCAGAAGCCGGTGATGGGTGGTCTCTCGTGCCTGTTCTCTTCCCCCGCGGTGGCGAAGCACGCGCCTTTGTCGTCGAGCTTCTCCGGCGCCGGGGAAGAGGACGAGTTGAAGGAGATGGGAAGCTCCTTCTCCTACTCGCCGAGCAAGTTTGGTGGGTCTTCATGGAAGAGGGATCATCAGAGCCCCGTTTCTGTTTTCCATTGCCCAGTTTCGTGTAGCAGTAGCAGCAACAGCACGGTTCGTTCATCGTCGAGGNGCAACGCCAGTGCTAGCCCTGTGAGGGTTAGTGGCTTCTTTGATGGGTTTGTGAGGAATGCTTTGGGTTCTTATTCTTGCTTGGATTATGATTCGCCTGGTCTCAACGACTTAGATGGAGATGCTTCTTCTAACCTTGTTGATGAGTTGACGTTCAATTTGGAGGATACTTTTGTGGAGGGTGGATTTGAGCCCTACGCTAAGAAGTTGCTTCTGGGTGCTCAGTTGAGGCACAAGGTCTTCTGTGAAGAGTTTGTTATTAAGGCCTTTTGTGAAGCAGAGAAAGCCCACAGAGGACAGATGCGAGCTAGTGGGGATCCGTATTTGCAGCATTGTCTGGAAACTGCTGTGCTACTGGCTTTGATCGGTGCCAATTCAACTGTTGTTGCTGCGGGGCTATTGCATGATACTCTTGACGACTCCTTTCTCACCTACGATTACATATTTGGGATGTTTGGCGCTGGAGTTGCTGATTTGGTTGAAGGGGTTTCTAAGCTGAGTCACTTAAGCAAGCTGGCTCGAGAAAATAATACAGCTTGCAAGTCTGTTGAAGCAGACCGCCTGCATACAATGTTCCTTGCCATGGCAGATGCAAGAGCTGTCCTCATTAAATTGGCAGATCGATTACATAATATGATGACGCTAGATGCATTGCCGGTGGCCAAGCAACAGAGGTTTGCGAAGGAGACTTTGGAGATTTTTGCACCTTTGGCCAATCGCTTGGGAATATCTAGTTGGAAGGAGCAATTAGAAAATTTATGTTTTAAGCATCTCAACCCAGTCCAGCACAAGGAGCTTTCGTCAAAGCTTGTGGAGTTGTATGATGATGCAATGATTGCTTCTGCAACAGAGAGATTAGAGCAAGCACTTAAAGATGAAGGCATATCTTATCATGTCATTTCTGGGCGGCATAAGAGCTTGTATAGCATTTATTGCAAAATGTTAAAGAAGAAGCTAACCATAGATGATATCCATGACATTTATGGACTGCGCTTGATTGTTGAGAAGGAGGAAGACTGTTATAAAGCCTTACAAGTTGTTCACCAGTTATGGTCTGAGGTACCTGGAAAGCTGAAAGACTACATATGTCGCCCCAAGTTCAATGGGTATCAATCTCTGCACACTGTGGTGATGGGCGAAGGCAAGATTCCCCTCGAAGTACAAATCCGGACAAAAGATATGCATTTACAAGCAGAATTTGGATTTGCTGCTCATTGGAGATACAAGGAAGATCACTGTCAGCATTCTTCATTTGTGCTTCAGATGGTTGAGTGGGCTCGATGGGTTGTCACCTGGCAGTGCGAAGCAATGAGCAAAGACTGTTCTTCTGTTGGAGATGCCGATTCAATCAAGCCGCCTTGCAAGTTCCCTACCCATGCTGCTGATTGTCCATATTCTTATAAGCCTGAATGTAGTCAGGATGGGCCTGTGTTCGTCATCATGATTGAGAATGACAAGATGTCTGTCCAAGAATTTCGTGCAAACTCAACAGTGATGGATTTATTGGAGAGAGCTGGGAGAGCAAGCTCAAGGTTGACTACATATAGGTTCCCACTGAAGGAAGAATTGAGGCCAAGGCTGAATCATGAGCCTGTAAGTGACCCCACTTGCAAGTTGAAGATGGGAGATGTGGTGGAGCTTACACCAGCCATACCTGACAAGTCTCTGACAGAATATAGGGAAGAAATCCAGCGTATGTATGATCGAGGGCTAACAACTGTATCATCAAGCACGGGAACCGCTGCCGCCGCCGCCGCCGCTGCTGCAAGCAGCATGGTTGGCACAAGTTGACCCGTGCTTGGCTCTCACATCTATCCCAACATTTTATTTAGTGACACTTACGTATATAGATAATATCTGTACAGAAACAACTATATGTTTACTACTATGAACTTTGCTAACTTAATTCATGTATCTTCTGAATGATTGATTTATGTAGTTTGGGCCAATGGCCTTGATAAATTGTTAACACCCCACTTTGTTTAATGAGTTTTGTGAGAGCAGAGTTTTATCTTTACCCTCGAATGGAAGAATTTGTGGAACAGTAGGCATCTCTCCATTGTATTATATGGTAGAGTCTGTACTTCCAAGGGATCATGTTAGCCGAGAGCAACATTTGTGTTTTGTGAAGTTTTTTTATCCAGCTACTAGTCTTATGTTACCTCCCCCTCCTTCCTGAAAAGTGTGTTAAAGCTTGTGAACTCTAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00052	13788	18590	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015969 guanosine tetraphosphate metabolic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000052s00005749.1	PF13328.1	HD_4	222	372	8.00E-41
Glyur000052s00005749.1	PF04607.12	RelA_SpoT	431	540	1.00E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.043
SRR1783600	control	21.009
SRR1783602	moderate drought stress	23.911
SRR1811619	moderate drought stress	23.765

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.682
DRR006520	Root Summer glycyrrhizin high producing strain	21.474
DRR006521	Root Winter glycyrrhizin high producing strain	23.418
DRR006522	Root Winter glycyrrhizin high producing strain	22.839
DRR006523	Root Summer glycyrrhizin low producing strain	18.615
DRR006524	Root Summer glycyrrhizin low producing strain	19.038
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.489
DRR006526	Leaf Summer glycyrrhizin high producing strain	22.501

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	38.036
SRR2868004	Drought Stress (root)	56.138
SRR2967015	Control (root)	62.750

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	78.922
SRR9715740	Leaf	67.164
SRR9715741	Leaf	131.839
SRR9715739	Root	28.395
SRR9715742	Root	37.237
SRR9715743	Root	35.632

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.668
SRR8749028	MeJA induced 9h	49.077
SRR8749029	MeJA induced 9h	34.969
SRR8749030	Uninduced	42.481
SRR8749031	Uninduced	36.131
SRR8749032	Uninduced	35.262

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	44.643
SRR8400027	Control - Root	42.377