Gene detail information of Glyur000051s00003473 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G22810.1 | 2.00E-29 | Integrase-type DNA-binding superfamily protein |
| NR | XP_003610945.1 | 4.44E-52 | Ethylene-responsive transcription factor ERF019 [Medicago truncatula] |
| Swissprot | tr|O80542|ERF19_ARATH | 3.00E-36 | Ethylene-responsive transcription factor ERF019 |
| trEMBL | tr|G7K978|G7K978_MEDTR | 2.00E-52 | AP2 domain class transcription factor {ECO:0000313|EMBL:AES93903.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00051 | 483183 | 483641 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | ERF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000051s00003473.1 | PF00847.15 | AP2 | 20 | 68 | 5.70E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.118 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.234 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.122 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.120 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.352 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.203 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.303 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.311 |
| SRR2868004 | Drought Stress (root) | 1.485 |
| SRR2967015 | Control (root) | 1.630 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.475 |
| SRR9715740 | Leaf | 2.759 |
| SRR9715741 | Leaf | 9.796 |
| SRR9715739 | Root | 0.523 |
| SRR9715742 | Root | 1.520 |
| SRR9715743 | Root | 1.345 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.203 |
| SRR8749028 | MeJA induced 9h | 25.707 |
| SRR8749029 | MeJA induced 9h | 6.453 |
| SRR8749030 | Uninduced | 2.412 |
| SRR8749031 | Uninduced | 8.123 |
| SRR8749032 | Uninduced | 9.081 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.285 |
| SRR8400027 | Control - Root | 1.151 |