Gene detail

Gene detail information of Glyur000051s00003472

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G71500.1	2.00E-74	Rieske (2Fe-2S) domain-containing protein
NR	XP_003517545.2	6.07E-135	PREDICTED: uncharacterized protein LOC100791021 [Glycine max]
COG	YP_007081685.1	1.00E-15	ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase [Pleurocapsa sp. PCC 7327]
trEMBL	tr\|K7K5E9\|K7K5E9_SOYBN	2.00E-135	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G44220.2}

Sequence

Transcript Sequence

>Glyur000051s00003472.1
ACTGACTCTACCCATCCACGCCACGCCACACCACACACGCAGATGCAGATGCAGACCCTTTCCCTTTCTCTCTCACTCACTCTCTCAAACCCTTCTCTCTCTGCTCCCACCCACGAGTCACAGGCTCCATTCCCACCATCTCCATGGCATTGGCCACCACCAACCCTTTACCCCTTTCCTTCTTCAAAACCCAAACCACTCTCCCTCTCTCTCCTTCCCCCACTCCCCTTCCACCTATCTGCCGCCACTCTGCGCCTCCCAGGTCTCGGCGATTCAAATGCAAGGCGACCCAAGTCTCCGTCGCCGAAGGGCCATCGGCGTCCGGCGACGACGGCGGAGGTAAGGGGAATTGGGTTCCGGTGGTGCCTCTGTCGGCGTTGCCCAAGGGGGAGCGGCGCGTGATCATCCAGGAGGGGGAGACGATATTGCTTTTGTGGTACAAAGACACAGTTTTCGCCATTGAAAATAGGTCCCCTGCTGAAGGCGCCTATTCTGAAGGCTTGCTCAATGCCAAACTCACCCAGGATGGGTGTATAGTTTGCCCAACAACTGACAGCACATTCGATCTGCGAACGGGGGAGATCAAGGAATGGTATCCAAACAATCCTGTTCTGAGAGTTCTGACGCCTGCATTGAGGAACCTCTTTGTATATCCTGTGAAAACAGATGAACAGAACATTTACATCAGCATGAGAGGAGGACTCAGAGCCGATGCTCCTACTGAAATTGTCTTCAGTGGGAAGGCTCAACCGGGTGTAACAGCCAGTGATGTCAACGTTGATGAGGTGAGAATGGTGGTGGATGAGGAAGTAGGGGGATTTGGTTTTACTGGGAAGAATGAGANCATAAACGGGAAAGCAGCTGTTATTGGTTTCCTCCTGTTGTTGGATTTTGAGCTTTTAACGGGTAAGGGTCTTTTAAAGGGAACTGGCTTCTTGGACTTCTTATATTCCGTCTCTAATGCTCTCAATTAGGATAGACTCTATAGACTATACACCATCATCATCGTTATCATCTGTGTAACATTTCCTTTTTGTATGTATCCAGTATTGTATACCATGGCAAATGTACAACCTTTTTATTTTTCAGTGTTCTCTTCTCTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00051	476791	479015	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0051537 2 iron, 2 sulfur cluster binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000051s00003472.1	PF13806.1	Rieske_2	69	182	6.10E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.757
SRR1783600	control	4.765
SRR1783602	moderate drought stress	2.401
SRR1811619	moderate drought stress	2.501

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.941
DRR006520	Root Summer glycyrrhizin high producing strain	3.152
DRR006521	Root Winter glycyrrhizin high producing strain	3.703
DRR006522	Root Winter glycyrrhizin high producing strain	3.391
DRR006523	Root Summer glycyrrhizin low producing strain	1.551
DRR006524	Root Summer glycyrrhizin low producing strain	1.748
DRR006525	Leaf Summer glycyrrhizin high producing strain	191.658
DRR006526	Leaf Summer glycyrrhizin high producing strain	189.579

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.338
SRR2868004	Drought Stress (root)	6.386
SRR2967015	Control (root)	4.595

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	246.910
SRR9715740	Leaf	353.133
SRR9715741	Leaf	195.876
SRR9715739	Root	2.608
SRR9715742	Root	3.449
SRR9715743	Root	3.987

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.960
SRR8749028	MeJA induced 9h	9.071
SRR8749029	MeJA induced 9h	11.685
SRR8749030	Uninduced	2.954
SRR8749031	Uninduced	1.521
SRR8749032	Uninduced	4.340

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.083
SRR8400027	Control - Root	8.708